Pseudomonas fitomaticsae: KJY40_29405
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Entry
KJY40_29405 CDS
T08740
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pfit
Pseudomonas fitomaticsae
Pathway
pfit00300
Lysine biosynthesis
pfit00470
D-Amino acid metabolism
pfit01100
Metabolic pathways
pfit01110
Biosynthesis of secondary metabolites
pfit01120
Microbial metabolism in diverse environments
pfit01230
Biosynthesis of amino acids
Module
pfit_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pfit00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
KJY40_29405 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
KJY40_29405 (dapF)
Enzymes [BR:
pfit01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
KJY40_29405 (dapF)
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GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
SPO11_like
Tail_completion_gp17
Motif
Other DBs
NCBI-ProteinID:
UFQ00078
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Position
6467817..6468647
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AA seq
276 aa
AA seq
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MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKMWGDRHTGIGFDQLLIVEAPSNPDVDF
RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKGGIIELDVRNDGQIGVNM
GAPRLVPADIPFQAPEQALSYQVDVDGTPVDLAAVSMGNPHAVLRVSDINTAPVHELGPK
IEHHPRFPARVNVGFLQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQGWMDSPL
LIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgcgttttaccaagatgcacggcctgggcaacgacttcatggttctcgacctg
gtcagccagcacgcgcatattcagcccaagcacgcaaaaatgtggggcgaccggcacacc
ggcatcggtttcgaccagttgctgatcgtcgaagcgccgagcaatccggatgtggatttc
cgttaccggatcttcaactccgacggttccgaagtggagcagtgcggcaacggtgcgcgc
tgcttcgcccgcttcgtgctcgacaagcgcctgaccgccaaacggcagatccgcgtcgag
accaagggcggcatcatcgagctggacgtgcgtaacgacggccagatcggcgtgaacatg
ggcgccccgcgcctggtgccggcggacattccgttccaggcgccggagcaggccctgagt
tatcaggtcgatgtcgacggtacgccggtcgatctggcggcggtatcgatgggcaacccc
catgcggtgctgcgggtcagcgatatcaacactgcaccggtgcatgaactggggccgaaa
atcgaacaccatccgcgcttcccggcgcgggtcaacgtcggctttctccaggtcatcgac
cgccatcgcgcgcaactgcgcgtctgggaacgcggcgccggggaaacccaggcctgcggc
accggtgcctgcgctgctgctgtagctgcgatcagtcaggggtggatggattcgccactg
ctgatcgacctgccgggcgggcgcctgtccattgagtgggcaggccccggccaaccggtg
ttgatgaccggcccggcagtgcgcgtatacgaaggacaagtgcgtctttga
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