KEGG   Pseudocercospora fijiensis: MYCFIDRAFT_130274
Entry
MYCFIDRAFT_130274 CDS       T03109                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
pfj  Pseudocercospora fijiensis
Pathway
pfj03018  RNA degradation
pfj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pfj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MYCFIDRAFT_130274
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MYCFIDRAFT_130274
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfj03019]
    MYCFIDRAFT_130274
   03041 Spliceosome [BR:pfj03041]
    MYCFIDRAFT_130274
Messenger RNA biogenesis [BR:pfj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     MYCFIDRAFT_130274
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     MYCFIDRAFT_130274
Spliceosome [BR:pfj03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    MYCFIDRAFT_130274
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 19330734
NCBI-ProteinID: XP_007923452
JGI: 130274
UniProt: M3B9N3
LinkDB
Position
Unknown
AA seq 126 aa
QLPLGLLHAAQGHPMLVELKTGETLNGHLVSCDTYMNLTLKEVVQTSPEGDKFFRLAECY
VRGNNIKYLRVPDEVVDAVKEQQAQQQSQRGGRGGMQQRGDHGGGRGDRARGRGRGGPGR
GRGRGG
NT seq 381 nt   +upstreamnt  +downstreamnt
cagctcccactcggcctactccacgccgcgcaaggccatcccatgctggtcgagctcaag
acgggagaaacgctgaacggccacttggtcagctgcgacacctacatgaacctcacgctc
aaagaagtcgtgcagacgagtcccgagggagacaagttcttccgactagccgagtgttat
gtgagaggaaacaacataaaatacctacgagtaccagatgaagtcgtggatgcggtcaag
gagcagcaggcgcaacaacagtcacaacggggaggcaggggtggcatgcaacagagaggc
gaccatggcggaggccgtggagacagagcacggggacgaggacgaggcggcccaggcaga
ggtcgtggtcgcggcggctga

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