Pseudocercospora fijiensis: MYCFIDRAFT_190635
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Entry
MYCFIDRAFT_190635 CDS
T03109
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pfj
Pseudocercospora fijiensis
Pathway
pfj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MYCFIDRAFT_190635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pfj03041
]
MYCFIDRAFT_190635
Enzymes [BR:
pfj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MYCFIDRAFT_190635
Spliceosome [BR:
pfj03041
]
Complex C
Other components
Step II factors
MYCFIDRAFT_190635
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
T2SSE
nSTAND3
AAA_30
GIPC1_GH2
AAA_19
Cas3-like_C_2
S1_RRP5
NUP120_helical_2
PhoH
AAA_16
Motif
Other DBs
NCBI-GeneID:
19335163
NCBI-ProteinID:
XP_007930699
JGI:
190635
UniProt:
M3ALJ0
LinkDB
All DBs
Position
Unknown
AA seq
1173 aa
AA seq
DB search
MDDLEQLEVLSLVSKITSEINNHLGINEKTIAEFVIDQHAQSANISQFKEKLAEFDFPDS
LSESIDRLIRTLHPKHKPNGAIREEKASKGSESKGNVFKGLAIPDKAIEPEDGLDDTFAA
LESLAGPPKSNGRKRSISPERPVRERSPKRSRRSRSRSPKRRNDDYLFEDEFGRTRSHRP
SDQKHEKRERRSRRDSFDRPPRQELDDEPILYKIYDGRVTGVKDFGVFVSLQGVKGKVDG
LVHISAMADYKVNHPSDLVARNQEVKVKVMKVQDKRISLSMAEVDQQSGQDLAPSKRIHL
GTGANSVGLKGASDFGGAVPVIESNGNGIRQRKRMTSPERWEIRQLIASGVVKAADYPDL
DEEYNAAMNGETIEEEEDVDIEVREEEPPFLAGQTKRSLELSPIRVIKAPDGSMNRAAMQ
GDVLAKERRDMRQSEAQDKAKAEAAKTDLNQEWNDPMIAPGERRFASDLRQPKAAASEMP
EWKKIATGRGELGKRTTMSIKEQRESLPAYKMRKQFLDAVRQNQLLIVVGDTGSGKTTQL
TQYLAEDGFANEGMIGCTQPRRVAAMSVAARVSDEVGCRLGEEVGYTIRFEDKTSSSTKI
KYMTDGIMQREILLDPELSKYSVIMLDEAHERTIATDVLFGLLKKTLKKRPDMKLIVTSA
TLDAEKFSEYFLQCPILTIPGRTFPVEIMYSREPESDYLDAALTTAMQIHLTEKAGDILL
FLTGKEEIDTSCEILHERMKALGPSVPELIILPIYGALPSEIASRIFEPAPGGSRKIVIA
TNIAETSITIDGIYFVIDPGFVKQTAYDAKLGMDRLQVTPISQAQAKQRAGRAGRTGPGK
CFRLYTESAFQNEMLPTTIPEIQRQNLSNTILMLKAMGINDLLGFDFMDPPPTNTMLTAL
EELYALGALDDEGLLTRLGRRMADFPMDPALGKSLITSVDLGCSDEMLSIVAMISAVQTI
FHRPKEKQQQADQKKARFHDPAGDHLTLLNVYNGWKNAGKNDAWCFENFIQPRNIKRAED
VRKQLVQILERHRLKVISCGRDTTRVRQALCAGFFRNSARKDPQEGYKTLVEGTPVYMHP
ASALFGKAAEHVIYHSLVETTREYMHNVTAIEPKWLVEAAPTFFKVAGGKNGELSKRKKA
ERIQPLHNRFAGEDDWRLSAQRKQGRGGGGTFG
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggacgacttggagcagctggaggtgctctcgctggtgagcaaaatcaccagcgagatc
aataaccacttgggcatcaacgagaaaacgatcgccgaattcgtgatcgaccagcacgcc
caaagcgcaaacatcagccagttcaaagagaaacttgccgaattcgattttcccgactca
ctaagtgagagcatagatcgcttgatccggacgctacatccgaagcacaagccgaatggc
gccattcgggaagagaaagcgagcaaaggcagcgaatcgaagggaaacgtcttcaaaggc
ctcgcaattccagacaaggccatcgagcccgaagatggcttggatgatactttcgcagcg
ctggagtcgttagcaggaccgccgaagtcgaacgggcgaaagcgtagcatatcaccggaa
cgaccagtgcgcgaaagatcaccaaagcgttcgagacgatcgagatcacgaagtccgaag
cggcgcaacgacgattaccttttcgaagatgagtttggacgtacgcgatcgcaccgaccg
tcggatcagaagcacgagaaacgagagcgcaggagcaggagagactcttttgatcgacct
ccaaggcaggagctggacgatgagccaattctatacaagatttatgatggtcgagtgaca
ggtgtcaaagatttcggtgtgttcgtaagtctgcaaggggtcaagggcaaagtagatggg
ctcgttcatatctctgccatggccgactacaaggtcaatcacccaagcgatcttgtggca
aggaaccaggaagtcaaggtcaaggtcatgaaagtgcaggacaagcgaatttcgctgagt
atggcggaagtcgaccaacagtcgggccaagatcttgctccaagtaagcgcatacatctc
ggcacaggtgccaattcagtaggcttgaaaggtgcaagtgattttggaggtgctgtgcca
gtcatcgaaagcaatggaaatgggatcagacaacgaaagagaatgactagcccagaaagg
tgggagatacggcagcttattgcgtcgggagtggtcaaggcagccgactatcctgatctg
gacgaggaatacaacgctgcgatgaatggagagactatcgaagaagaggaagacgtggat
attgaggtccgtgaggaggaaccgccattcttggcaggccagaccaagcgatctctcgag
ctgtctccaattcgtgtcatcaaagctccggacggcagcatgaatagggctgcgatgcag
ggagatgtgttggctaaagagcgacgagacatgcgacaatcagaagctcaagacaaggcg
aaagccgaagccgcgaagacagacctcaatcaggaatggaatgaccccatgatcgcgccg
ggagagcgaagatttgcaagcgatttgcgacagccgaaagctgctgcttcagaaatgccg
gagtggaagaagatcgcgactggacgtggcgagctaggaaagaggacaaccatgtccatc
aaggaacagcgggaatctttgccagcatataagatgcggaagcagtttctcgatgctgtt
cgacaaaatcagctcttgattgtggttggagacaccggatccggaaagacgacgcaactt
acccagtacctggcagaggacggctttgcgaacgagggcatgatcggatgtactcaacct
cgacgtgttgcggccatgtcggtggcagcccgtgtgtcagatgaggttggatgtcgtctc
ggcgaggaagtgggctacaccatacgattcgaggacaagaccagttccagcaccaagatc
aagtacatgactgacggtatcatgcaacgtgagattctactcgatcctgagctcagcaaa
tacagcgtaatcatgcttgatgaggcgcacgagcgtaccatcgccactgatgtgttgttc
gggctgctcaagaagactttgaagaaacgccctgacatgaagctcatcgtcacctcggca
acacttgatgcagaaaagttctcggagtacttcttgcagtgcccgatcttgaccatccct
ggccgtacgttcccagtcgagatcatgtacagccgcgagcctgaaagtgactacttggat
gctgctttgacgacagcgatgcagatacatctgaccgagaaagctggcgacatcctcctc
ttccttacaggtaaagaggagattgacacaagctgcgagatccttcacgagcgcatgaaa
gcactaggaccgtcagtaccagagctgatcattctgccaatctatggagctttgccctca
gaaattgccagccgcatcttcgagcctgcccccggtggtagcaggaaaattgtgatagcg
accaacatcgcggaaaccagtatcaccatcgatggaatatacttcgtcattgacccgggt
ttcgtgaaacaaactgcttacgatgcaaagcttggtatggaccgactgcaggtcacgccc
atctcacaggcacaggcgaagcagcgagctggacgtgctggacgtaccggaccgggcaag
tgcttcaggctttacaccgaatctgctttccagaatgagatgcttccaacaacgattcca
gaaattcaacgccagaatctgtcaaacaccattctcatgctgaaagcaatgggaatcaac
gatctgcttggatttgacttcatggacccgccgcctaccaatactatgcttacagctttg
gaagaattgtacgctctgggcgcgcttgacgatgaaggtcttctcacaagacttggaagg
cgaatggcagatttccccatggacccagcattagggaaatctctcatcacttcagtggat
ctcgggtgttctgatgaaatgctcagcattgtcgccatgatctcagctgtacaaacaatt
ttccaccgtcccaaggaaaagcagcaacaagccgaccagaagaaggctcgcttccatgac
ccagcgggagaccacctcactttactgaacgtctataatggctggaagaatgccggcaag
aatgatgcctggtgtttcgagaacttcatccaacctcgcaacatcaagcgagcggaagat
gttcggaaacaactggtgcagatcctggagcgtcaccgtctgaaagtgatatcttgcggg
cgcgacaccacccgggtcagacaagctctttgcgcaggcttcttccgcaactccgcccgc
aaggaccctcaggaaggctacaagactctcgtcgaaggtactccggtatacatgcatcct
gccagcgccctattcggcaaagctgccgagcatgtcatctatcattctctggtcgagacg
acacgagagtacatgcacaatgtcaccgccatcgagccgaagtggcttgtcgaagctgct
cctacattcttcaaagttgccggcggcaaaaatggcgagttgtcgaaacgtaagaaagct
gagagaatacagcctcttcataaccgctttgctggtgaagatgattggaggctgagcgct
cagcgaaagcaaggtagaggtggtggaggcacgtttggatag
DBGET
integrated database retrieval system
