Pseudocercospora fijiensis: MYCFIDRAFT_196717
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Entry
MYCFIDRAFT_196717 CDS
T03109
Name
(RefSeq) hypothetical protein
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
pfj
Pseudocercospora fijiensis
Brite
KEGG Orthology (KO) [BR:
pfj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfj03009
]
MYCFIDRAFT_196717
Enzymes [BR:
pfj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MYCFIDRAFT_196717
Ribosome biogenesis [BR:
pfj03009
]
Eukaryotic type
Pre-60S particles
Helicases
MYCFIDRAFT_196717
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
19335602
NCBI-ProteinID:
XP_007926653
JGI:
196717
UniProt:
M3AFR5
LinkDB
All DBs
Position
Unknown
AA seq
513 aa
AA seq
DB search
MAQDEKVEKRPKSFEALTPELSTWILDFTKGMGFARTTPVQAMAIPLLMGNKDLVVEAVT
GSGKTLSFLIPLVERILKAEDPNKKGYVRSIVVAPTKELASQIYHVLAGLLDFHAPSAAM
MKQSNKPEEDSEDEDMDDADIEEVPPGPYVIPQLLVGGRTKPSEDLATFSTLNPNILIGT
PKRLVEVLHSSKVVLKRHWFDLLVLDEADRLLDPNFQPDLQKILELVPKERRTGLFSASI
SEAVDELVRVGMRYPFKISAKVRSKSGALDKRTPESLKLYHLVTKPTLKLPHLKNILERA
QAEKTIVYVSTRAGVDYWNHVLPAVLGVSVYPLHGDHKSAIRTKNLQRFRDSTTPAILLT
TDVLARGIDIPDIDLVIQLDPPKQPKDFIHRCGRTGRAGKRGMAITFLSEGAEEDYIRYL
SLQGTLLEPYPDPLTIPPETAEETIFKIRTLLTSKRELHDRSQKAFVSWLQAYTKTLPTD
IFSIRKLNWPETAKSWALLRWPKMPELKRKPSV
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggatgagaaggttgaaaaaaggccaaagtcctttgaggccctcactccagaa
ctatccacatggatcctggacttcacaaaaggcatgggattcgcccgcacaacgccagtc
caggccatggccattccactcttgatgggcaacaaagatcttgtcgtcgaagctgtcact
ggaagcggaaagaccttgagctttctcataccacttgtagagcgcatcctgaaagctgag
gatccgaacaagaaaggctatgtacggtcgatcgtggttgcgccgacgaaagaattggcc
agtcagatctatcatgtactcgctggattattggactttcatgcgccatcagctgctatg
atgaagcaaagcaataagcctgaagaggacagcgaagacgaagatatggacgatgcggac
attgaagaagtaccacccggaccttatgtgataccgcagctgctcgttggtggcagaacg
aagccttcggaagatctggccaccttctcaactctgaacccaaacatcctcataggcaca
ccgaagcgactggtcgaggtgcttcattcatcaaaagtcgtgctgaagagacactggttc
gacctgctggtgctggacgaagcagatcgactgcttgaccctaatttccaaccagatttg
cagaagattttggaacttgtgcctaaggagcgtcgaacaggtttgttcagcgcttcaatt
tcggaagcagtggatgagcttgttcgagtcggcatgagatatcccttcaaaatcagcgcc
aaagttcgtagtaagtctggagcactggacaaacgcacaccggaaagtctgaagttgtac
cacctcgtcaccaagccgacattgaaactaccacacttgaagaatattctcgagagggcg
caagcggagaagacgattgtgtatgtctcgacgagagctggtgtcgattactggaaccac
gtcctacctgcggtcttaggcgtatcggtctatcctctccacggcgatcacaaatctgca
atccgcaccaagaacttacaaagatttcgcgactcaaccactcctgctattcttctcaca
acagacgtgctagctcgcggcatcgacataccagacatcgacctagttatccaactcgac
ccacccaagcaacccaaggactttatccatcgctgcggccggactggtcgtgcagggaaa
cgtggcatggctatcacatttctcagcgaaggtgccgaagaggactacatccgatacttg
agcctgcaaggcacacttctagaaccctacccagatcccctcaccatacccccagaaacc
gccgaagaaacaatcttcaaaatccgaaccctcctaacatcaaaacgcgaacttcacgac
cgctcccaaaaagccttcgtctcctggctccaagcctacacaaaaaccctcccaaccgac
atattctccatccgcaaactcaactggcccgaaaccgcaaaatcttgggctctcctccgc
tggcccaaaatgccagaactcaaacggaagccaagcgtttag
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