Pseudocercospora fijiensis: MYCFIDRAFT_202076
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Entry
MYCFIDRAFT_202076 CDS
T03109
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pfj
Pseudocercospora fijiensis
Pathway
pfj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pfj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MYCFIDRAFT_202076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfj03021
]
MYCFIDRAFT_202076
03019 Messenger RNA biogenesis [BR:
pfj03019
]
MYCFIDRAFT_202076
Transcription machinery [BR:
pfj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
MYCFIDRAFT_202076
Messenger RNA biogenesis [BR:
pfj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
MYCFIDRAFT_202076
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
Pfc11_Clp1_ID
VHS
Zn_ribbon_ISL3
Motif
Other DBs
NCBI-GeneID:
19335999
NCBI-ProteinID:
XP_007922956
JGI:
202076
UniProt:
M3B7K4
LinkDB
All DBs
Position
Unknown
AA seq
646 aa
AA seq
DB search
MSSKSPRGSFSVASSSDEVAKDFEESLRDLQSNNRYEISNLTVIAKENTEHAQAISRALE
GHIKTTSPTRKLPALFLLDSIVKNVGTPYTVYLGRNLYSTFMDAYTLVDGATRRHMEGML
KTWKEPVPGSIDPRPVFPLDTVRPIDNALNRAKAAVQQRQGMPQMPFRAMATPPQHNGQY
PTPPPHGFPPHHANDIDAVKRDIDGLVPRFQYQLATRPGDDGLQKQLGALQALRTLLDTQ
RVSPPELQEIKNQVSRLSPGSYPPPQATPQPPVPTPQWQPPVPIPQPYQQPPVPFPAATP
QPPQQPAPPNLTPTALNGLQALLANVPKPSTPQMRAAMPGFRDATHSQLNAIQNHAAAPP
LNDTADLLSSLAKAGLIKPVPQATPNAPLPAAVAPPPPDATASLLKSLQSILPPKSQTGT
PTLPPAQPVPAAVPPVTAASLKVFRPELVFALYDAQPNQCSTCGRRFLATDEGREKKSLH
LDWHFRTNQRIADPNLNRGHHRNWYVDEMAWITHTEFDPSTTTATTADSEAANKVQKGPQ
DQSVRAPAGMTKNTCSICFEEMKSSYSEDMQDWIFANATYYNGKIVHATCLAEMTRSQVH
VPAVGGSLAATFAGVAGQRERSSTPDSLKRKAETAMAGQGSRMRFE
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaaatctccgagaggctcattctcggttgcgtcttcgtctgatgaagtggcc
aaggatttcgaagagtctttgagagacctgcagtccaacaaccgatacgagatcagcaac
ctcacggtcatcgcgaaggagaatacagaacatgcacaagctatctcgcgggcgcttgaa
ggccatatcaagacgacttcgcccactcgcaagctgccagcacttttcctcctggacagt
atcgtcaagaatgtcggcacgccttacacggtgtatcttggccggaacctctacagcaca
ttcatggatgcatatacactggtggatggcgcgactcggcggcatatggagggcatgcta
aaaacatggaaggagccagtgcccggatcaatagatccacgtcctgtcttcccgctcgac
actgttcgtccgatcgacaatgcacttaatagagcaaaggctgccgttcagcagcggcag
ggaatgccacaaatgccgtttcgagctatggccacacctccacagcacaacggccagtat
ccgacgcctcctcctcacggattccctccacatcacgcaaacgacatcgatgccgttaag
cgtgacatcgacggccttgtcccacgattccagtatcagctagccactcgtcctggtgat
gatggactccagaagcagcttggtgctctgcaggccttgcgtactctcctagatacgcaa
cgagtcagcccgccggaactgcaggaaatcaagaatcaggtgtcgcgactttcacctggc
tcatacccacctccgcaagcaactccacagccgcctgtgcctacaccgcaatggcaacct
ccagttccgatcccacagccttaccaacagccaccagtgccatttcctgctgcaacacca
caacctcctcagcagcccgccccaccaaacttgacgccaactgcactgaatggactgcaa
gcacttctcgcaaacgtgccaaagccaagcacgccgcaaatgcgggctgctatgccaggc
tttcgcgatgccactcattctcagctgaacgctattcagaaccatgccgcagcaccacct
ttaaatgacaccgcggatctgttgtcatcgcttgctaaagctggcctgatcaagcctgtc
ccgcaagctacacccaacgctccacttccagcggcagtcgcgccgcctccgccggatgcc
acagcttcccttctgaagtcgctccaaagcatactccctccgaaatcacaaactggaacg
cctaccttacctccggctcagcccgtacctgctgctgtgccacctgtgaccgctgcatcg
ctgaaagtcttccggcccgaacttgtctttgcactctatgacgcccagccgaatcagtgc
agcacctgcggtcgtcgattcctcgcgacagatgagggacgagagaagaagagtttacac
ctggattggcattttcgcacgaatcaacgcatcgcggatcccaatctgaatcgtggacat
caccggaattggtacgtagatgagatggcatggatcacccatactgaatttgatccgtca
accacaacagccactactgcagacagtgaagcggcgaacaaggtgcagaagggcccacaa
gaccaatctgtgagagctcctgcgggtatgaccaagaacacatgcagtatctgctttgag
gagatgaaaagcagttattcggaggatatgcaagattggatcttcgcgaatgcaacatac
tacaacggcaagattgtgcatgctacgtgcttagctgagatgacgcgctctcaagtacat
gtacctgccgttggcggctcattagcagcgacgttcgcaggtgtcgccggtcagagggag
agaagttcaacgccggactcgttaaagcgaaaggcagagacggcaatggcaggacagggg
agtcgaatgagatttgagtag
DBGET
integrated database retrieval system
