Pseudocercospora fijiensis: MYCFIDRAFT_202861
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Entry
MYCFIDRAFT_202861 CDS
T03109
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pfj
Pseudocercospora fijiensis
Pathway
pfj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYCFIDRAFT_202861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfj03019
]
MYCFIDRAFT_202861
03041 Spliceosome [BR:
pfj03041
]
MYCFIDRAFT_202861
03009 Ribosome biogenesis [BR:
pfj03009
]
MYCFIDRAFT_202861
03016 Transfer RNA biogenesis [BR:
pfj03016
]
MYCFIDRAFT_202861
Enzymes [BR:
pfj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MYCFIDRAFT_202861
Messenger RNA biogenesis [BR:
pfj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
MYCFIDRAFT_202861
Spliceosome [BR:
pfj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
MYCFIDRAFT_202861
Complex C
U4/U6.U5 tri-SnRNP related factors
MYCFIDRAFT_202861
Ribosome biogenesis [BR:
pfj03009
]
Eukaryotic type
Pre-60S particles
Helicases
MYCFIDRAFT_202861
Transfer RNA biogenesis [BR:
pfj03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
MYCFIDRAFT_202861
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF677
nSTAND3
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
19336080
NCBI-ProteinID:
XP_007924651
JGI:
202861
UniProt:
M3B3S4
LinkDB
All DBs
Position
Unknown
AA seq
1085 aa
AA seq
DB search
MEDDLFDVFDEKPQANGGAKHKKSRKRSLNGDIKNGSADVAMSDAAAIGHDHTETKDPAS
GNGAGAGAGADTATPSSDDQRGQKRQRRENEPEPIVADTFETEQSREVAAAAGLQAQKED
QAVVLQHQVRHQVSLPPDYEYVPISQHKRPEEPARVWPFQLDPFQEVSIASIERNESVLV
SAHTSAGKTVVAEYAIAQCLKNNQRIIYTSPIKALSNQKYREFQAEFGDVGLMTGDVTIN
PTATCLVMTTEILRSMLYRGSEIMREVAWVVFDEVHYMRDKSRGVVWEETIILLPDKVRY
VFLSATIPNAMQFAEWITKTHNQPCHVVYTDFRPTPLQHYFFPAGAEGIHLVVDEKGVFR
EENFNKAMAAIAEKAGDDGSDPMAKRKGRGKDKKTNKGGKKEGPTDIYKIVKMIMMKNYN
PVIVFSFSKRECETYALQMSQLAFNDDSEKQMVQKVFDSAIEMLSEEDKQLPQILHLLPL
LRRGIGIHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGV
TQRWVTPSEFIQMSGRAGRRGLDERGIVIMMIDEKMDPTVAKEIVRGEQDKLNSAFHLGY
NMVLNLIRVEGISPEFMLERCFFQFQNAASVSGLEKQLMELEQKRADMIIEDEAEIKEYY
DLRQSLTNYANDMKKVINHPQYLTRFLQSGRLVKIKYKDHDFGWGAVVNFTNVRPGRNQT
AEDIPSSQRVVVDVIMNVAADVTPPDRSQLKDDLPPGVRPPAPGEKSKMEVVPVMNGTID
SVGHLRVFMPNDLRAQEQRNTVRKALEEISRRFPDGVAILDPIENMGINDDGFKKLLRKI
EVLEHKLLSHPLHKSERLPELYDKYAAKVELGTEIKNLRKKMTDALSVLQLDELKNRKRV
LRRLGFVNEADVVQIKARVACEISTGDELVISELLFNGFFNDLTPEQCAAVLSCFIFEEK
SDDAPQLKEELGKAFREVQAAARQVAKVSMECKVLVNEEEYLQSFKPQLMEVVYAWCHGE
TFAKICTMTDVYEGSLIRLFRRLEELLRQTAEAAKVMGSEELKEKFEQSLTKVRRDIVAA
QSLYL
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacttgttcgatgtcttcgatgagaagccgcaagcgaatggcggcgcaaag
cacaaaaagagcaggaagcgcagcctgaacggagacattaaaaatggcagcgccgacgtg
gccatgtcagatgctgcggccatcggacacgatcacacagagacgaaggatcccgcgagc
ggcaatggcgctggcgctggcgctggcgctgatacagcaacaccatcctctgacgaccag
cgtggccagaagcgacaacgccgcgagaatgagccggagcccattgtagcagatactttc
gagactgagcaatcgcgtgaggtcgcagccgcggcgggactgcaggcgcagaaggaagac
caggctgttgtattgcaacaccaagtgcggcatcaagtctcactgccaccagactacgaa
tacgtgcccatctcgcagcacaagcgcccagaggagccggcgcgcgtatggcccttccaa
ctcgatccattccaggaagtatctatcgcttccatcgagcgcaatgagtctgttctggtc
tccgcgcacaccagcgcgggaaagaccgtagtcgctgaatatgccattgcgcaatgtctg
aagaacaaccagcgaattatttacaccagtccgatcaaggcgctcagcaaccagaaatat
cgtgagttccaggctgagttcggtgacgttggtttgatgactggcgatgtcaccatcaac
cccaccgccacttgtctcgtcatgactaccgagattctgcgatctatgctgtatcgcggc
agcgagatcatgcgtgaggttgcatgggtagtcttcgacgaagtgcactacatgcgtgac
aagtcacgaggtgtagtctgggaagagaccatcatcctcttgccagacaaggtgcgctat
gtcttcctgtctgccaccatccccaatgccatgcaatttgcagaatggatcaccaagact
cacaaccagccatgtcacgtcgtctacaccgacttccgcccgactccactacagcactac
ttctttccagctggtgccgaagggatccatctggttgtggacgagaagggggtttttcga
gaggagaacttcaacaaggctatggccgccattgctgaaaaggccggcgatgacgggtct
gatcccatggctaagcgaaaaggccgaggcaaggataagaagacgaacaagggtggcaag
aaggaaggtccgacagacatctacaagatcgtcaagatgatcatgatgaagaactacaac
cctgttattgtattctctttctccaagcgagaatgcgagacctatgctctgcagatgtcc
caactggcattcaacgatgactcggaaaagcagatggtgcaaaaggtcttcgattccgca
atcgagatgctgtcagaagaggataagcagctgccacagatcttgcatcttctaccactc
ttacgccgtggcattggcatccaccactccggtcttcttcccatcctgaaggaaaccatc
gagattctgttccaggaaggtctcatcaaggtcctcttcgcaaccgagaccttctcgatt
ggtctgaacatgccggcgaagaccgtcgttttcacctctgtgcgcaagtttgatggtgtc
acccagcgctgggtaacaccttccgagtttattcaaatgtcaggtcgcgctggtcgaaga
ggtctcgatgagcgaggtattgtgatcatgatgatcgacgaaaagatggatcccactgtg
gcgaaggagattgtccgtggcgaacaggacaagctcaacagcgccttccatcttggctac
aacatggtactcaaccttattcgagttgagggcatcagcccagagtttatgctggagcgc
tgcttcttccaatttcagaatgctgcttcggtctctggactggagaagcaattgatggag
ctggagcagaagcgtgctgacatgatcattgaagatgaggccgagatcaaggagtactac
gatctgcgtcagagcctcacgaactacgccaacgatatgaagaaagtcatcaaccatcca
cagtacctgactagattcctgcagagcggtcgattagtcaagatcaagtacaaggatcac
gactttggctggggtgcggtcgtcaacttcaccaacgtgaggcctggtcggaatcagact
gcagaagacatcccatcctcgcaacgtgtggtggttgatgtcatcatgaatgttgctgcc
gatgtgactccaccggatcgcagtcaactcaaggatgaccttcctccaggcgttcgacca
cctgcaccaggcgagaagagcaagatggaggttgtacccgtcatgaatggtacgattgac
agcgtcggtcatcttagagtattcatgcccaacgacctgagagcacaagagcagcgaaat
actgtacgcaaggcccttgaggagatctcgcgccgctttccagatggtgtagccattctg
gatccgattgagaatatgggcatcaacgatgatggattcaagaagctcctccgcaagatt
gaagtcctggaacacaagctgctttcgcatcctctgcacaagtcagagcgtctacctgag
ctttacgacaaatacgctgccaaggtcgagctcgggactgagatcaagaatcttcgcaag
aagatgacagatgctttgtctgtgctgcagctcgacgagctcaagaatcgcaagcgtgtc
cttcgccgtttaggattcgtcaacgaagcagatgtcgtgcaaatcaaggctcgcgtggcg
tgcgagatctctactggtgacgagcttgtgatatcagaacttttgttcaacggctttttc
aacgatctcacaccggagcagtgcgcagccgttctatcttgtttcatcttcgaggagaag
agcgatgacgcgccacagctgaaggaagagctcggcaaggcctttagggaagtccaggcc
gcagctcgacaggtcgccaaggtctcgatggagtgcaaggtccttgtcaacgaagaggaa
tacttgcaatcctttaagcctcagctgatggaggtcgtgtatgcttggtgccatggcgag
acattcgcaaagatctgcacaatgacagatgtctacgaaggatccctcatccgactcttc
cgccgcctcgaggagcttctccgccagactgcggaagctgccaaggtcatgggaagtgag
gaactgaaagagaaattcgaacagtctcttaccaaggttcgacgagatatcgtggctgct
caatctctgtatctgtag
DBGET
integrated database retrieval system
