Pseudocercospora fijiensis: MYCFIDRAFT_208153
Help
Entry
MYCFIDRAFT_208153 CDS
T03109
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pfj
Pseudocercospora fijiensis
Pathway
pfj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MYCFIDRAFT_208153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pfj03041
]
MYCFIDRAFT_208153
Enzymes [BR:
pfj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MYCFIDRAFT_208153
Spliceosome [BR:
pfj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
MYCFIDRAFT_208153
Complex C
U4/U6.U5 tri-SnRNP related factors
MYCFIDRAFT_208153
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_N
Helicase_C
HA2_C
DEAD
AAA_22
nSTAND3
PWI
AAA_19
Cas3-like_C_2
SRP54
AAA_23
ABC_tran
Motif
Other DBs
NCBI-GeneID:
19336651
NCBI-ProteinID:
XP_007928132
JGI:
208153
UniProt:
M3AUB7
LinkDB
All DBs
Position
Unknown
AA seq
1079 aa
AA seq
DB search
MADLRTYVSDHLLKLVGGSEDMIVDFVLSTAKTAKSSSHLADKLRGMLDSNDTDLKRFAD
GLYAQIPQSNGQSLPKREKPKESRKKYAMVEMEVEEEAPRETEKKESREKKSKHTSDRER
RRSRSRERHREKKSRRRDGDFDDRWGDAEEDEAEEEFPSPPAKRTRFDEPSRSPRRDSPD
RKSEPEEDEEERDRKERKAFEERLRNKDAGNTKKITEDRSSKREAEDEKRRAQAGKLSEA
EMKALRLRSRQDYLKKRSTQELALLRKQVADEAEEERTNPGLTQEERDEFARNREALRLA
EARENIDDHHDGYAMPEDYITEKGKMDMKRKEEALYSRYVDRDAQGRERYVTEHEEWERE
QLAKTKAQIVVADRINEAEYEYVFDEEQQLKWVTDAAMKGGLSDMKTAEERMLAQQMLAA
ERKAKTIEEKRKTLPVYQYRDVFLKAVKDFQIVIIVGETGSGKTTQLPQYLYEAGYCENG
MKVGCTQPRRVAAMSVAARVAEEVGVKLGHEVGYAIRFEDATSEKTKLKYMTDGMLLREF
LTEPDLGGYSALMIDEAHERTLHTDILFGLVKDIARGRPDLKLLISSATLDAQKFSEFFD
DAPILNIPGRTYDVEMNYSLQPEANYLSAAITTVFQIHLSQPMPGDILVFLTGQDEIEQA
EQSLQETARKLGSAAPELMICPIYANLPTDLQQKIFDPTPPKVRKVVLATNIAETSLTID
NIVYVIDPGYVKENRYTAATNMESLVAVPISRASANQRAGRAGRTQPGKCFRLYTKWAYY
NDLPESTTPEIQRTNLNSIVLMLKSLGINDLINFDFMDPPAPDMLIKSLEQLYALGALND
KGELTKIGRQMAEFPTDPMLAKAVLAADKEGCVEEVLSIIAMLGEASALFYRPKDKKLQA
DAARARFTSKEGGDHISYLNIWNQWVDSDFSYVWAKENFLQQRSLTRARDVRDQLAKLCD
RVEVTLSTCGASNLPPIQRSITAGFFPNAARLQRGGDSYRTVKNNLTVHIHPSSVLMDVR
PKWVIFYELVLTSKEFMRSVMPLQPEWLMEVAPHYYKRQDVEALGGVEKNVAKIEERKR
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atggccgaccttcgcacatatgtgtctgaccacttgctcaagctggtcggcggcagcgag
gacatgatagtggatttcgtgctgtccactgcgaaaacggccaagtcgtcgtcgcacttg
gcagacaagctacgaggcatgctggactccaacgatactgatctgaagcgcttcgctgat
ggactgtatgctcagatcccccagtccaatggccagtctctgccgaaacgagaaaagccg
aaggaatcgcggaagaagtatgccatggtcgagatggaagtggaagaggaagctccgcga
gagaccgagaagaaggaaagcagggagaagaagtcgaagcatacatccgatcgggagagg
cgaagatctcggagcagagaaaggcatcgtgaaaagaagtcaagaaggcgcgatggagac
ttcgatgatcgctggggcgatgctgaggaggatgaggcagaagaagaatttccctctccg
cccgcaaaacgaaccagatttgatgagccctcccgatcgccgcgccgagacagccctgat
cgcaagtctgagccggaagaggacgaagaagaacgagatcgaaaggagcgcaaagctttt
gaggagcgattgaggaataaagatgctggcaataccaagaagatcaccgaagatcgttcg
tcgaagcgcgaggcagaggatgaaaagcgtagagcacaggctgggaagctttcagaagcc
gagatgaaggcgctgcgattgcggtcaagacaggactacctcaagaagcggtccacacag
gaattggctctcttacggaagcaggtcgcagacgaagctgaagaggagcgtactaaccct
ggcctgacacaggaagagcgcgatgaattcgctcgcaatcgagaagctcttcgtctggcc
gaagcgcgagagaacatcgatgaccatcacgatggatatgccatgccggaagactacatc
acggagaagggcaagatggacatgaagcggaaagaagaagcactctacagtcgttacgtg
gacagagatgctcaagggcgggagcggtacgtgactgaacatgaggaatgggagcgagaa
cagctcgccaagacgaaagcccaaatagtcgtggcagatcggatcaacgaggccgaatac
gagtatgtcttcgatgaggaacagcagctgaaatgggtcaccgatgcggccatgaaaggt
ggtctgagtgacatgaaaacagctgaagagcgcatgttggcccagcaaatgcttgctgct
gaacgaaaggccaagaccatcgaggagaagcgcaaaacgttacctgtctaccagtatcgc
gacgtctttttgaaggctgtcaaagacttccagatcgtcatcattgtcggagagactggt
tccggtaagacgacccagctaccacaatacctctacgaagctggctactgcgagaatggg
atgaaagtcggttgcactcagccgagacgtgtcgccgcaatgagcgttgctgcacgtgtg
gcggaggaagtcggtgtgaagctgggccatgaagtcggatatgctattcgtttcgaggac
gcaacctctgagaaaacgaagctgaagtatatgacggatggtatgctactcagagagttc
ttgactgaaccggatctgggtggctatagtgctctcatgattgacgaagcccacgagcgg
actctgcatactgatattctctttggtctcgtcaaagatatcgctcgtggacgaccagac
cttaagcttttgatctcatccgccacgcttgacgctcagaaattcagtgagttcttcgat
gatgcaccaattctcaacattcccggacgaacttacgatgtcgaaatgaattactccctc
caacccgaggccaactacctctcagccgccatcacgaccgtcttccagattcatctatct
cagccaatgccgggagacatccttgtcttcttgaccgggcaggatgaaattgagcaggcg
gagcagtcgctccaagagacagctcgaaagcttggcagcgctgcgccagaactgatgatc
tgtcccatctacgccaaccttcctactgatctgcaacaaaagattttcgatccaacgccg
cctaaagtgcgtaaggtcgtccttgccacgaacattgccgaaacaagtttgaccatcgac
aacattgtatatgtcattgatcctggctacgtcaaggagaatcgatacactgcagccacc
aatatggagtctctcgtggcagtgcccatctcgcgtgcgtctgcaaaccagcgtgctgga
cgagcaggtcgaacgcaacccggcaaatgtttccgcctatacaccaaatgggcctactac
aacgatctgcccgagagtacgacacccgaaattcagaggacaaatctaaacagcatcgta
ctcatgctcaaatccctcggcatcaacgacctgatcaacttcgattttatggatccaccg
gcacccgacatgctcatcaaatcactcgagcagctttatgctctcggcgccttgaacgat
aaaggcgaactgaccaagatcggtcgtcaaatggccgaattccccacagaccccatgctc
gccaaagcagtcctcgccgcagacaaggaaggctgcgtagaagaagtcctctcaatcatc
gccatgctcggcgaagcctccgccctcttctaccgccccaaagacaaaaaactccaagcc
gacgccgcacgcgcccgcttcacctccaaagaaggcggcgaccacatctcatacctcaac
atctggaaccaatgggtcgactccgatttcagctacgtctgggccaaagaaaacttcctc
caacagcgctccctcacccgcgcccgcgacgtccgcgaccaactcgccaaactctgcgac
cgcgtcgaagtcaccctctccacctgcggcgcctcaaaccttccccccatccaacgctcc
atcaccgccggcttcttcccgaacgccgcacgcttacaacgcggaggcgacagctatcgc
acggtcaagaataatttgacagtccatatccatcctagctccgtacttatggatgtacga
ccgaaatgggtcatcttttatgagttggttttgacgagtaaggagtttatgcggagtgtt
atgcctttgcaacctgaatggttaatggaggttgcgccgcattattataaaagacaggat
gttgaggcgcttggtggggttgagaagaatgtggcgaagattgaggagaggaagaggtag
DBGET
integrated database retrieval system
