KEGG   Pseudocercospora fijiensis: MYCFIDRAFT_25154
Entry
MYCFIDRAFT_25154  CDS       T03109                                 
Name
(RefSeq) hypothetical protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
pfj  Pseudocercospora fijiensis
Pathway
pfj03018  RNA degradation
pfj03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pfj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MYCFIDRAFT_25154
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MYCFIDRAFT_25154
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfj03019]
    MYCFIDRAFT_25154
   03041 Spliceosome [BR:pfj03041]
    MYCFIDRAFT_25154
Messenger RNA biogenesis [BR:pfj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     MYCFIDRAFT_25154
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     MYCFIDRAFT_25154
Spliceosome [BR:pfj03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    MYCFIDRAFT_25154
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 19338414
NCBI-ProteinID: XP_007919679
JGI: 25154
UniProt: N1Q8G8
LinkDB
Position
Unknown
AA seq 98 aa
MSLNSYLNKKVCLILVDGRCMVGNLISCDAVTNLALENCVERIVRGHEEEEDSEEEERGL
FMVRGDNVVVCGLVDEELDGKIDWRKVKGSEIGSTKHV
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtctctaaacagctacttgaacaaaaaagtctgcctgatcctcgtcgacggccgctgt
atggtcggcaacctgatttcctgcgatgcagtcacgaatttggcgctagagaattgtgtg
gagaggattgttcggggacatgaggaggaggaggatagtgaagaggaggagaggggactg
tttatggtgagaggggataatgttgtggtttgtggacttgtcgatgaggagttggatggg
aagattgattggaggaaggttaaggggagtgagattgggagtacgaagcatgtttga

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