Pseudocercospora fijiensis: MYCFIDRAFT_87816
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Entry
MYCFIDRAFT_87816 CDS
T03109
Name
(RefSeq) hypothetical protein
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
pfj
Pseudocercospora fijiensis
Pathway
pfj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pfj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MYCFIDRAFT_87816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfj03019
]
MYCFIDRAFT_87816
Messenger RNA biogenesis [BR:
pfj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
MYCFIDRAFT_87816
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
TFIIF_alpha
Cwf_Cwc_15
Motif
Other DBs
NCBI-GeneID:
19342623
NCBI-ProteinID:
XP_007930818
JGI:
87816
UniProt:
M3A209
LinkDB
All DBs
Position
Unknown
AA seq
354 aa
AA seq
DB search
MEDDEDDFYGGGGNGVKQERHADADEKEEQMDVSEDGSEDDDSDDDVQFTLEKPEGAKAE
PPPGSKAARQQAKIAASAVRDEKAKSGTPAIKSEAQRAGSAAPPTAVKGTLTHNGKEGKD
FPEIRTSKLDVNAIPTWPANGKPITELDIDADLAEHSKPWRLPGTDQTDFFNYGFDEYTW
TQYTIRQQSMSDTINQQKQEDAQMKALFGNAGGDGQAGGMGAMGGMPQGMQPDPQMAKMA
QDMGIPLEFFMQMMQQNGGMPGMGMGMGGQQGQFNQPGGDFGAGQNSVSPQPQAGQGFQP
PSGPSGGGQQGQQGGFNMEGFSPQQIAIMQQEQQGGHMGGGGGGGRGGRRRGRW
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacgaggatgatttctacggcggtggggggaacggcgtcaagcaagagaga
cacgcggatgcagacgagaaagaagagcagatggatgtatccgaagatggatccgaggac
gacgatagcgacgatgatgttcaattcacgttagagaagccagaaggcgccaaagcagag
ccaccgccaggttcgaaagcagcgcgacaacaggcgaagattgcagcctcggcggtcagg
gacgagaaagcgaagagtggcacaccagccatcaagtcagaggcacagcgagcaggctcg
gcagcacctcccactgccgtcaaaggcacactgacacataatggcaaggaagggaaagac
ttccccgagatccgcacaagcaagcttgatgtgaacgcaataccaacgtggccagcgaac
ggtaaaccgatcacagagctcgatatcgacgccgatctcgccgaacactccaagccttgg
agattgccaggtaccgaccagaccgactttttcaactacgggttcgatgagtacacatgg
acgcagtataccatcaggcaacagagtatgtcggacacgatcaaccagcagaagcaggag
gatgcccagatgaaagctctgttcggtaacgctggtggtgatgggcaggcaggaggcatg
ggtgcaatgggaggaatgcctcagggcatgcagcccgaccctcagatggcgaagatggca
caggacatgggaattccccttgagttcttcatgcagatgatgcagcagaatggcggcatg
ccaggcatgggcatgggcatgggaggacaacaagggcaattcaatcagccaggcggagac
tttggcgcgggtcagaatagtgtcagcccgcagccacaggcaggtcaaggcttccaacca
ccatcagggccaagcggcggcggccagcaaggccagcaaggcggtttcaacatggaagga
ttcagtccacagcaaattgccatcatgcagcaagaacagcagggtggacatatgggtggt
ggcggtggaggagggcgcggggggcgacgccgaggacgttggtga
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