Pseudocercospora fijiensis: MYCFIDRAFT_96696
Help
Entry
MYCFIDRAFT_96696 CDS
T03109
Name
(RefSeq) hypothetical protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pfj
Pseudocercospora fijiensis
Pathway
pfj03022
Basal transcription factors
pfj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MYCFIDRAFT_96696
09124 Replication and repair
03420 Nucleotide excision repair
MYCFIDRAFT_96696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfj03021
]
MYCFIDRAFT_96696
03400 DNA repair and recombination proteins [BR:
pfj03400
]
MYCFIDRAFT_96696
Transcription machinery [BR:
pfj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MYCFIDRAFT_96696
DNA repair and recombination proteins [BR:
pfj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MYCFIDRAFT_96696
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Muted
Motif
Other DBs
NCBI-GeneID:
19342919
NCBI-ProteinID:
XP_007925662
JGI:
96696
UniProt:
M3AKW8
LinkDB
All DBs
Position
Unknown
AA seq
652 aa
AA seq
DB search
MSPTIATVSYKKKDGTLAVAEDKRNTWWTPADPPSSAPAVTINVTDITNLQQTPKTSKAI
ALKILVKENSYVFTFNHKDNAREEQQTVTDVLSGAIAANKAKDASKLVPQAASASGAATP
TPNPGENGGQSAAMAIAKAVSSKGVDDAWYDDAKLKSDFNLQRSLLESNKALSERFNQAL
KDKPESVSVSQFTSQFWSARIHLLRAHAIDKAQKQGEYNVLPEIKFVREPAKKEGEPDTK
KLQLSKEQIHMIFKQYPVVKQAYDDTVPKPLSPGEFWTKFFNSRLLKKLKGERITQHDPT
DRVLDKYLDREATGPASIAHIPHWMDLEGNEQNHSQRKGNRPDEDMRPSSYDKVPILRVL
NNLSEKMMAHVAPQDGEAHAPIGLDEETFEQLRLQDLANEESDNRVRLNVKEQQRYVGGD
KDALSADAQLYAKQDPRKVLSMLNSGLQPSNLGSDEQGTLRLDQVIGYNSDDSESDEDLT
SQEANGAPPKKKRKHKFASHGAMTAASKDIMSSIKNRRNATSSDTNTLNGLSESTYENLA
MTHNTTTEFLHYFWSLFLSGDASRTAELAQLVSTLDRSLDRINAVGEQAEAERQRRIDAL
KQKLEERIKNGAKRRNVDFEKQVPGGKKAVDAMIKPTVQALQQASNAYRKAL
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgtctcccacaatcgcaacggtctcgtacaagaaaaaggatggcacgctcgctgttgcc
gaagacaagcgcaatacctggtggacaccggcagatccgccttcatcggctcccgcagtg
acgattaatgtcactgacatcacgaatctccagcaaacgcccaaaacctcgaaagcgatc
gcactgaaaatcctcgtcaaggagaacagctatgtcttcacgttcaaccataaggacaac
gcacgagaagagcagcagacagtgacggatgtgttgagcggcgcaatagcagcgaacaag
gcgaaagatgcgagcaaacttgtcccgcaggcagcaagtgcctctggtgcggcaacgccc
acacctaaccctggcgaaaatggcggacagagtgccgccatggcaatagcgaaagctgtg
tcctcaaagggtgttgacgatgcgtggtatgatgacgccaagctcaagtccgacttcaat
ctacagcggtcactgctcgagtccaataaagcgctgagcgaacgcttcaatcaagcttta
aaagataaacctgagagcgtatcggtatcacaattcacatctcagttctggtcggcgcga
atacatctgctacgcgcacatgctatagacaaggctcaaaagcaaggagagtacaatgtc
ttaccggaaatcaagtttgtgcgagagcccgcgaagaaggagggcgaacctgatacgaaa
aagcttcagctatctaaggagcagatacatatgatcttcaagcagtatcccgtggtgaag
caagcgtacgatgacacagttccgaagccgctcagtcccggcgaattctggaccaagttc
ttcaacagcagattactcaagaaactcaagggagagaggatcacacagcatgatccaacg
gatcgggtgctggacaagtatctcgaccgggaggcgactgggcctgctagcatagcacat
atcccgcactggatggatctggagggtaatgagcagaatcacagtcagcgaaagggaaac
cgacctgacgaggatatgcgaccgagctcatatgataaagtgcccatcttacgagtgctc
aataacttgtccgaaaaaatgatggcgcatgtagcaccacaagatggagaggcacatgcg
ccgattggtctggacgaggagacattcgagcagcttcggcttcaggatcttgccaacgaa
gagtccgacaatagagtccgactcaatgtcaaagagcagcaacgctacgtcggaggcgac
aaggacgctctttctgcagacgcccagctgtatgccaagcaagacccccggaaagtgctg
tctatgcttaactctggcctgcagccatcaaatctcggcagcgatgagcaaggcacacta
cgcctcgatcaagtaataggatacaacagcgacgattccgagtctgatgaagacttgacg
tcgcaagaagccaatggcgcgcctcctaagaagaagcggaaacacaaatttgcatctcac
ggcgccatgaccgccgcatcgaaagacatcatgtcatcaatcaagaatcgacggaacgcc
acttcatcagacacgaataccctgaatggtctctccgagtctacgtacgaaaacctcgca
atgacacacaacaccaccaccgagtttttgcattacttctggtcactctttctctcaggt
gacgcatctcgaactgcagagctcgcacaactggtatcgactcttgatcggtcattagat
cggatcaacgctgtaggtgagcaggcggaagccgagcggcaaaggcggatagacgcgctc
aaacagaagttggaggaaagaatcaagaatggtgccaaacggcgcaacgtcgacttcgag
aaacaggtgcccggaggaaagaaggctgtggacgcgatgatcaagccgacagtacaggct
ttgcagcaggcgagtaatgcgtataggaaagcattg
DBGET
integrated database retrieval system
