Pseudomonas frederiksbergensis: PFAS1_01700
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Entry
PFAS1_01700 CDS
T04786
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFAS1_01700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfk03019
]
PFAS1_01700
03009 Ribosome biogenesis [BR:
pfk03009
]
PFAS1_01700
Enzymes [BR:
pfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFAS1_01700
Messenger RNA biogenesis [BR:
pfk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFAS1_01700
Ribosome biogenesis [BR:
pfk03009
]
Prokaryotic type
rRNA helicases
PFAS1_01700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
APV38113
LinkDB
All DBs
Position
complement(336480..338153)
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKSLPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNAQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaatccgaatattcttgcagcc
gtcatcgcgactggctacgaagaaccttcggctattcagcagcaatcgatcccgatcatc
atggccggtcacgacatgattggtcaggcgcaaaccggtacgggtaaaaccgctgcgttc
gccctgccgatcctgcatcgcatcgatcctgctaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccgggcgttaccgttgtggccgtttacggcggcgcccctatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagttctgtcgaccgtgaaccacctggttctcgatgaagcggacgaa
atgctcaagctgggtttcatggacgacctcgaagttatcttcaagtcgttgccgccaacc
cgtcagaccgtattgttctcggctaccttgccgcagtcgatccgtgccattgccgagcgc
catctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgatgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgct
cagaaccaacgtgagcgcgtgatcgaatccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgctcgtggtctggacgttccgcgcatcactcacgtgttcaacgtt
gacatgccgtacgatccagagtcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagttgccgaagtccgcctgccggacgcccaggctgttctc
gatgcccgtatcaagaaactgaccaacagcctgtcgccgctggtggctgatgccgagtcg
actcacggtgatctgctggatcgcctgaccgccgacatcggttgcaccccgcgtgcactg
gccgctgctctgctgcgcaaggcaaccaacgctcaggcgttgaccctggctgccatcgag
aaagaacgtccactggtgccgaacaacgcaccgcgtggcgatcgtccagagcgtaccggt
gatcgtccggaccgtggtgatcgtgagcgtcgtgctccggttccattggccgaaggtcgt
gctcgttgccgtaccgcgctgggtgcgcgtgatggtatcgctgccaagaacctgctgggc
gctatcctcaatgagggtggtctggctcgcgaagcaatcggtcgcatccaggtgcgtgac
agcttcagcctcgttgagctgccggaagatggtctggagcgtctgctgaccaagctgaag
gacactcgcgttgccggtaagcagttgaagctgcgtcgctatcgcgaagattga
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