KEGG   Pseudomonas frederiksbergensis: PFAS1_02100
Entry
PFAS1_02100       CDS       T04786                                 
Name
(GenBank) DNA-binding protein HU
  KO
K03530  DNA-binding protein HU-beta
Organism
pfk  Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:pfk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pfk03032]
    PFAS1_02100
   03036 Chromosome and associated proteins [BR:pfk03036]
    PFAS1_02100
   03400 DNA repair and recombination proteins [BR:pfk03400]
    PFAS1_02100
DNA replication proteins [BR:pfk03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    PFAS1_02100
Chromosome and associated proteins [BR:pfk03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    PFAS1_02100
DNA repair and recombination proteins [BR:pfk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      PFAS1_02100
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-CCDC81_euk_1
Other DBs
NCBI-ProteinID: APV38189
UniProt: A0A1J0ER89
LinkDB
Position
complement(416783..417055)
AA seq 90 aa
MNKSELIDAIAASADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG
RNPQTGKTLEIAAAKKPGFKAGKALKEAVN
NT seq 273 nt   +upstreamnt  +downstreamnt
gtgaacaagtcggaactgattgatgctatcgctgcatccgctgatatcccgaaagctgct
gctggccgtgcgctggacgctgtaatcgaatccgtcactggcgctctcaaggctggcgac
tctgttgttctggttggtttcggtactttctccgttaccgatcgtccagctcgcattggt
cgtaacccacagaccggtaagacgctggaaatcgcagcagccaaaaaaccaggtttcaaa
gccggtaaagcactgaaagaagctgtcaactaa

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