Pseudomonas frederiksbergensis: PFAS1_03975
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Entry
PFAS1_03975 CDS
T04786
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pfk
Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfk03009
]
PFAS1_03975
Enzymes [BR:
pfk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PFAS1_03975
Ribosome biogenesis [BR:
pfk03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PFAS1_03975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
MTS
PCMT
Methyltransf_11
Methyltransf_23
RrnaAD
Cons_hypoth95
Methyltr_RsmB-F
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
APV38536
UniProt:
A0A1H5HSD6
LinkDB
All DBs
Position
complement(786733..788085)
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AA seq
450 aa
AA seq
DB search
MAKQERGLRFQPTGGSKAPQIPTGKKQRLSIERLANDGRGIAFFEGRTWFVIGALAGEEV
EARVLGAHGKVVEARTERVFQASELRRPAPCPHAGRCGGCSVQHLPHNEQLALKQRMLAE
QLSKVAGVEPEEWAAPLSGAEFGYRRRARVAVRWDMKAKKLEVGFRAAGSQDIVAINECT
VLVQPLQPIMTRLPEMLRRLSKPQALGHVELFSGSSLAVLLRHMAPLSDADMTILKDFCA
FHEAQLWLHGDGEPQPVEADQSLGYRLEQWDLDLAYRPGDFIQVNAGVNEAMIAQALEWL
KPTADERVLDLFCGLGNFALPLAKVVREVVAVEGVQAMVERAAANAASNNLHNAKFFQAD
LSQPLTDAEWAREGFCAVLLDPPRDGAFEAVRKLASLGAKRLVYVSCNPATLARDTVELI
KQGYRLKRAGILDMFPQTAHVEAMALFEAS
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacaagagagaggcctgcgcttccagcccaccggcggcagcaaggccccgcaa
attccgactggcaaaaagcagcgcttgagtatcgagcgcctggctaatgacggtcgcggt
atcgcgttttttgaaggtcgcacctggttcgtcatcggcgcattggccggtgaagaagtc
gaagcacgtgtattgggcgcccacggcaaagtggtcgaggcgcgcactgagcgggtgttc
caggccagcgaactgcgccgcccggcaccgtgtccgcatgccggtcgctgtggcggttgc
agcgtgcaacatttgccgcacaacgaacaactcgccctgaaacagcgcatgctcgccgag
caattgtccaaggtcgccggtgtcgaacccgaagaatgggccgcgcctttgagcggtgcg
gaattcggttaccggcgtcgcgcccgagtggcggtgcgctgggacatgaaggcgaaaaaa
ctcgaagtcggtttccgcgccgctggcagtcaggacatcgttgcgatcaacgaatgcaca
gtgctggtacagcccttgcaaccaatcatgacccgcttgccggaaatgcttcggcgcttg
agcaaacctcaggcgctggggcatgtggaattgttcagcggttcatcgttggcggtgctg
ctgcggcacatggcgccgctgtccgacgccgacatgacgatcctcaaggatttctgcgcg
ttccatgaagcccaattgtggctgcacggtgacggtgaaccgcaaccggtcgaggctgac
cagtcgttgggttatcgactggaacagtgggatttggacctggcgtaccgaccgggagat
ttcatccaggtcaacgccggggtcaacgaagcgatgatcgcccaggcgttggagtggctg
aagccgacggcggatgaacgcgttctcgatctattctgtggcttgggtaactttgccttg
ccgctggccaaggtcgttcgcgaagtggtggcggtggaaggtgtgcaggcgatggtcgag
cgggcagccgcgaacgctgctagcaacaatcttcataatgcgaagttttttcaggccgat
ttatcccagcctttgaccgatgccgaatgggcgcgcgaaggcttttgtgcggtactcttg
gacccaccgcgtgacggtgctttcgaggcagtgcgcaagcttgcgtccctgggcgccaaa
cggttggtgtatgtgtcgtgcaatccggcaacgctggcgcgcgacacggtcgaattgatc
aagcagggctaccggttaaaacgtgccgggattctcgatatgtttcctcagacggcacat
gtcgaggccatggcgttatttgaagcgagctag
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