Pseudomonas frederiksbergensis: PFAS1_07275
Help
Entry
PFAS1_07275 CDS
T04786
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFAS1_07275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfk03019
]
PFAS1_07275
03016 Transfer RNA biogenesis [BR:
pfk03016
]
PFAS1_07275
Enzymes [BR:
pfk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PFAS1_07275
Messenger RNA biogenesis [BR:
pfk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PFAS1_07275
Transfer RNA biogenesis [BR:
pfk03016
]
Prokaryotic type
tRNA degradation factors
PFAS1_07275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
KH_N4BP1_2nd
OB_RRP5_4th
S1_2
Motif
Other DBs
NCBI-ProteinID:
APV39156
LinkDB
All DBs
Position
complement(1521974..1524079)
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA
TALLGAIRAEFGEAISQAYTITIKADRYARLGELKDLVVAKLSGEEGQPTSAEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccagttcggtcagtcgaccgttaccctcgagactggc
cgtatcgcccgtcaggcctccggcgcagtattggtcaccgttgacgacgacgtcagcgtg
ttggtgactgtggtcggcgccaagcaagccgatccaggcaagggcttcttccctctgtct
gttcactaccaggaaaaaacttacgctgccggtaagatccctggcggtttcttcaagcgt
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtttccacc
agcaagaagaccgatccggacatcgctgcgatgatcggtacctcggctgcgctggccatc
tccggcattcctttcgatggcccgatcggcgctgctcgcgttgcattccacgaaagcacc
ggctacctgctgaacccgacttacgaacaactgaaagcttcgagcctggacatggtcgtt
gccggtacttcggaagccgtgttgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgcagtactgtttgctcacgacgagttccaggtggtgatcaacgccgtt
aaagaactggccgctgaagctgccaagccgacctggacctgggctccacagccagaagcc
accgcactgctgggcgctatccgtgccgagttcggcgaggcgatctcccaggcttacacc
atcaccatcaaggccgaccgttacgctcgtctgggcgaactgaaagacctagtggttgcc
aagctgtccggcgaagaaggccaaccgacttccgctgaagtcaaagcggctttcggcgaa
atcgaataccgcaccgttcgcgaaaacatcgttaacggcaagccacgtatcgacggtcgc
gacaccaagaccgtacgtccgctgaacatcgaagtcggcgttctgccgaagacccacggt
tcggctctgttcacccgtggcgaaacccaggctctggtagttgcaacactgggcaccgcc
cgtgacgcacaactgctggataccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttccctccgttctcggtaggtgagtgtggtcgcatgggtggcgccggtcgtcgc
gaaatcggtcacggccgtctggctcgtcgttcggttcaggccatgctgcctgctgccgac
gtgttcccgtacaccatccgtgttgtgtcggaaatcaccgagtccaacggttcgagctcc
atggcttcggtctgcggcgcttccctggctctgatggatgccggcgttccgatgaaggca
ccggttgccggtatcgccatgggtctggttaaagaaggcgagaaattcgccgtcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaagtagccggtaccgcc
aaaggtgttaccgcgctgcagatggacatcaagatcaaaggcatcaccgaagaaatcatg
gagatcgctctgggccaagccctggaagcgcgcctgaacatcctcggtcagatgaaccag
atcattggccagtcgcgtaccgagctgtcggaaaacgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgtcatcggtaaaggcggcgcgaccattcgtgcgatc
tgtgaagagaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagcggctgaagctgcacgtcagcgcgttctgggcatcaccgcagaagct
gaaatcggcaagatctacgttggtaaggttgagcgcatcgtcgacttcggcgcattcgtc
aacatcctgccgggcaaggacggtctggttcacatctcgatgctgagcgacgctcgcgta
gaaaaagtgaccgacatcctgaaagaaggccaggaagtggaagtactggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaagacgtagcagcagccaaggcttcgggc
gtttaa
DBGET
integrated database retrieval system
