Pseudomonas frederiksbergensis: PFAS1_07655
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Entry
PFAS1_07655 CDS
T04786
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PFAS1_07655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_07655
Enzymes [BR:
pfk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PFAS1_07655
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PFAS1_07655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_30
AAA_12
AAA_25
Motif
Other DBs
NCBI-ProteinID:
APV39225
LinkDB
All DBs
Position
complement(1609284..1612970)
Genome browser
AA seq
1228 aa
AA seq
DB search
MITKPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGAESSGFGRELLPPQILVV
TFTDAATKELRERIRTRLAEAARFFRDETPAPDSLIAELREEYLPEQWSGCANRLDIAAQ
WMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMQGDA
LNWVRGNWGGPAALLPRVRGLFASERDSVEGKEPAELITACLQERRAALLELKMPWRQWA
DELLVICHQGVASKSVDGRKMQARYFEPWFEKIRAWAEDESLEQLDIGTGFTRLTPDGMA
EAWKGEVPRHPGLDAMPGLKACLDGLPTPDAAVLQHAAQWVGTRFEEEKRRRAEMGFDDM
LLRLDAALQSDGGERLATLIREQFPVALIDEFQDTDPVQYRIFESIYRIEDNNPECGLFL
IGDPKQAIYAFRGADIYTYLRARQATAGRLHTLGTNFRSSHGMVRAVNHVFERAESRETG
RGAFLFREKNGENPVPFLPVESQGRKEVLHIDGQVVPALNIWHLSADQPLSGAVYRQQLA
AACASEITALLNGGQQGRAGFIQDGKDFRGLLPADIAILVRDGKEAQAVRGELSARGVRS
VYLSDKDSVFAAQEAHDVLTWLKACAEPDVERPLRAALACITLNLSLAELERLNQDELAW
EARVMQFRHYRELWRKQGVLPMLRRLLHDFLLPQTLILRSDGERVLTNLLHLSELLQQAA
AELDGEQALIRHLSEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFVC
SAKPVDGSRLPLHYHDESGKAQVTLKPTAELIVQADDERLAEDLRLLYVALTRAQHACWL
GVTDLKRGNNNSSVLHLSALGYLLGGGVPLAESAGLKRWLEDLQQDCPALSYGEMPEATV
EHYHPPRNDATLLAPLIPKRKASENWWIASYSALRIGDSMSVGTDEAPESPQAQKLFDDE
RLDPQAPREVVAGGADIHRFPRGPNPGTFLHGLLEWAGDEGFTATPKAVEDAIARRCNRR
GWEGWITALSDWLQHLLTSPLHIGGGQAPVVFEQLTQYRVEMEFWFASHKVDVLKLDELV
RQYTHNGVARVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGVDDAAYTEQAMEQ
SILDNRYDLQYVLYLLALHRQLKARLTDYDYDRHVGGALYLFLRGTRAPSQGVYFARPPK
ELIERLDRLFQGKPEPKAEPAWEQGVLL
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgattacaaaacctctggccttggcatttcccctgcgcggcagccaattgatcgaagcg
agcgccgggaccggcaagaccttcaccatttccgcgctttatctgcgtctggtccttggc
cacggcgcagagtcgagcggcttcggacgtgaactgttgccaccacaaatcctggttgtg
acgttcaccgatgccgcgaccaaagaattgcgcgaacgtatccgcacgcgtctcgctgaa
gctgcacggtttttccgtgatgaaacaccggcccccgacagccttatcgcggagcttcgt
gaggagtaccttcccgagcagtggtccggctgcgcgaaccgcctggacatcgccgcgcag
tggatggacgaggcggcagtttcgactatccacagttggtgccagcgcatgttgcgcgag
cacgcgttcgacagtggcagcctgttcacacagaccctggaaaccgatcacagcgatttg
ctgggcgaagtcttgcgcgattactggcgtctgttttgttacccgatgcaaggtgatgcg
ctgaactgggtgcgcggtaattggggcggtccggcagccttgctgccgcgagtacgtggt
ttgttcgccagtgaacgagacagtgttgaaggtaaagagcctgccgagctgataacggcg
tgtctgcaagagcgacgggcagccttgctcgagctcaagatgccctggcgccagtgggcg
gacgaattgcttgttatctgtcaccagggtgttgcgagcaagagcgtcgacggtcgcaag
atgcaggcgcgctatttcgaaccctggttcgaaaagatcagggcctgggctgaagacgaa
tcccttgagcagctggatatcggcaccggattcacgcgcctgactcccgacggtatggcc
gaagcctggaagggtgaagtaccccgtcatcccgggctggacgccatgcccggcctcaag
gcctgtctcgatggattgccgacacctgatgccgccgtgctgcaacacgcagcccagtgg
gtcggtacgcggttcgaggaagaaaagcgtcgccgtgcggagatgggcttcgatgacatg
ctgctgcgtctcgatgcagcgttgcaatccgatggcggcgagcggttggcgaccctgatt
cgtgagcagttcccggtcgcgttgatcgacgagttccaggacaccgaccccgtgcagtac
cggatcttcgagagcatctatcgcatcgaagacaacaatcccgaatgcggtctgttcctg
atcggcgaccccaagcaagcgatctacgcgttccgcggtgccgacatctacacctacctg
cgcgcccgccaggccaccgctggccgactgcataccctgggtacgaatttccgttccagc
catggcatggtccgtgcggtgaaccatgtgttcgagcgcgccgaatctcgcgagaccggc
cggggcgccttcctgtttcgtgaaaagaatggcgagaacccggtaccgttcctgcccgtc
gaatcccaaggtcgcaaagaagttttgcatatcgacggccaggtcgtgcccgccctcaac
atctggcacctgtccgccgatcagccgctgtccggcgcggtgtatcgacagcaactcgcc
gccgcctgcgccagtgaaatcaccgctttgctcaacggcgggcaacaaggtcgcgcgggt
ttcatccaggatggcaaggacttcagagggctgctacccgcggatatcgcgatcctggtc
cgcgacggtaaagaagctcaggctgtgcggggcgaactctccgcccgtggtgtgcgcagc
gtctatctgtcggacaaggactcggtgttcgctgcccaagaggcccacgacgtactgacc
tggctcaaggcttgtgccgagccggatgtcgagcgtccactgcgggccgcgttggcctgc
atcacgctgaacctgtcgctggctgagctggaacggctgaatcaggacgaactggcctgg
gaagcgcgggtcatgcagttccgtcattatcgcgagctctggcgcaagcagggcgtgttg
ccgatgctgcggcgattgctgcatgactttctgctgcctcagacattgattctgcgcagt
gacggcgagcgggtgctgaccaatttgctgcacctgtccgaattgctgcaacaggcggcc
gccgaactcgatggtgagcaagcgctgatccgtcatttgtccgagcacctggcgttgtcc
ggtcaggccggcgaagagcagatcctgcgtctggagagcgacgaacaactggtcaaggtc
gtgaccattcacaagtccaaggggcttgagtatcccttggtgttcctgccattcgtttgc
tcggcgaagccggtggatggcagtcgtctgccgctgcattaccacgacgaaagcggcaag
gcccaagtgaccttgaagccgacggccgagttgattgttcaggcggatgatgagcgactg
gccgaggatctgcgcttgctttacgtggccctgacccgggcgcaacacgcctgctggctc
ggagtgacggatctcaagcgcggcaataacaacagctcggtgctgcacctgtcggcattg
ggttatctgttgggcggcggagtgccattggccgagtcggcaggcttgaagcgttggctg
gaagacctgcagcaggactgtcctgcgctgagctacggtgaaatgcctgaagcgaccgtc
gagcactaccatccaccacgcaacgatgcgacgttgcttgctccgctgatacccaagcgc
aaggccagcgaaaactggtggattgcctcctacagtgccctgcgcattggcgacagcatg
agcgtgggcactgatgaagcgccggaaagcccgcaggcgcaaaagctcttcgacgacgaa
cgcctcgatccccaggcaccacgcgaggtagtggccggcggcgcggatatccatcgattc
cctcgcggcccgaaccccggcacctttctccatggtttgctcgaatgggccggtgacgaa
ggttttaccgccacgccaaaagcggtggaagacgccattgcccgtcgttgcaatcgacgt
ggctgggaaggctggataaccgccctgagcgattggctgcagcatctgcttacctctccg
ctgcatatcggtggaggacaggctcccgtggtattcgagcaattgacccaataccgcgtc
gagatggaattctggttcgccagccataaggtcgatgtgctcaagctcgatgaactggtg
cgccaatacacccacaacggcgtggcccgggtggctgccgagccggtgttgctcaatggc
atgttcaagggcttcatcgacctgacgttcgaacacgacgggcgctactacgtcgccgac
tacaaatccaactggctgggcgtcgatgacgcggcctataccgagcaggccatggagcag
tcgattctcgacaaccgttacgacctgcaatatgtgctgtacctgttggccctgcatcgc
cagctcaaggcgcgacttaccgattacgattacgaccggcatgtcggcggtgcgctctac
ctgttcctgcgcggtacgcgcgcgcccagccaaggcgtgtatttcgcccgtccaccaaaa
gagttgatcgaacgtctcgaccggctgttccagggcaagccagaacccaaggccgaaccc
gcctgggaacagggagttttgctatga
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integrated database retrieval system
