Pseudomonas frederiksbergensis: PFAS1_07660
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Entry
PFAS1_07660 CDS
T04786
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PFAS1_07660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_07660
Enzymes [BR:
pfk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PFAS1_07660
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PFAS1_07660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
RIH_assoc
Motif
Other DBs
NCBI-ProteinID:
APV39226
LinkDB
All DBs
Position
complement(1612967..1616419)
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AA seq
1150 aa
AA seq
DB search
MPDATSLSAGFMVVHGNRLDELRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPEDDDMGGCGIAAAIDVQLPGSFMWQLYRMVLGRDEIPVKSLLDKAPLTWRLMRLLPQL
INQPHFEPLQRFLTHDTDLRKRYQLAERLADLFDQYQVYRADWLEDWAEGRHQLRNGRGE
TKPLTPANCWQAELWRALLLDVGEQGMAQSRAGVHQRFIERINSLDVAPGGLPSRVIVFG
ISSLPAQALEALAGLARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQARKSGMPVVL
DPQTLHQHAHPLLSAWGKQGRDYINLLDSYDDPSSYRSAFRDGRIDLFSDSQPQNMLNQL
QDDILELRPLNETRECWPAVDPAKDESIRFHIAHSAQREVEILHDQLLARFSADPDLRPR
DVIVMVPDIDSYAPHIRAVFAQLERHDPRFIPFTLADQGQRGRDPLLIAIEHLLKLPDSR
FPVSEILDLLDVPALRARFGVEERDLPTLHRWIEGAGIRWGMNAEQRAGLGLPQELEQNS
WRFGLRRMLLGYAVGSAGACEGIEPYDEIGGLDAALIGPLVALLDALEIAHQELTQPAAP
KQWGFRLHALVQLFFLASNEHDDYVLAQLEELRETWLETCESVGLHDELPLTVVREAWLA
GLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEALLSARDQLYISWVGRSIRDNSERPASVLIGQLRDHLASGWRLHD
VDEDLLEAITQEHPLQPFSARYFHEGDHLFSYANEWQVLHQTGEPSTDTEVLDPYVQEEP
LSLGQLQDFLRNPVRHFFSQRLKVYFEAAEVPLADEEPFVLDALQRYSLSDSLLEAALGH
LDSTDQVLEAQAKRLQNSGLLPMAGFGECLQRELIEPLPDLLQRYQQLLALWPTPLTNAL
PVSLELQGLRLEGWLSGLHQRADGGLLSITTIPNSIGSIKSRKWHRLTRPWVNHLVACAS
GMAMSTALVASDDSLLLGPMPEDAALRILGDLLMAWQTGMRQPLPIAVKTGFAWLGQTDP
VKAQAAARKAYEGDGLTTDGERRESPALARQFADFDSLAADETFPDWCNALYRPLLEAPW
RSLNSEEPRA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgccggacgcgacgtccctcagtgctggttttatggtggttcacggcaatcgcctggac
gagttgcgcagcctggtggtcagctggatgcgacgttacccgctggctcccttggaaaat
gaaattgccctggtacagagcaacggcatcgctcaatggctgaagctcgcactggcggaa
gatcctgaagatgacgacatgggtggctgcggaatcgccgcagccatcgatgtgcagtta
ccgggtagctttatgtggcagctctatcgcatggtgcttgggcgtgacgaaatcccggtc
aaatccctgctcgataaagctcctttgacctggcgtctgatgcgtctgcttccacagttg
atcaatcaaccgcacttcgaaccgctgcagcgcttcctgacccatgacaccgatttacgc
aaacgctatcagttggccgagcggctggcggatttgtttgaccaataccaggtgtatcgg
gccgactggcttgaagactgggccgaaggtcgtcatcaactacgaaatggcagaggcgaa
accaaacctctgaccccggctaactgctggcaggcagagttgtggcgagcgctgttgctg
gatgtgggtgaacaaggcatggcgcaaagtcgagccggcgtccatcagcggtttatcgag
cgcatcaacagcctcgacgtagcccctggcggattgccttcgcgggtaatcgttttcggg
atttcttctctgcctgctcaagccctggaagcactggcggggctggcccgtttcagccag
gttctgctctgcgtacacaacccgtgtcgtcaccattgggcagacatcgtcgccgataaa
gacctgttgcggcatcaatacaagcgtcaggctcgcaagagcggaatgccggttgtgctc
gacccgcaaacccttcaccagcatgcccatccactactgtcggcttggggcaaacagggg
cgggactacatcaatctgctcgacagctacgacgatcccagcagctatcgctcggcattc
cgcgatggccgtattgacctgttcagcgacagccaaccgcagaacatgctcaatcaattg
caggacgacattcttgagttgcgtcccttgaacgagactcgcgagtgctggccagctgtc
gatccggcaaaggacgagtcgatccgttttcacattgcccatagcgcccagcgcgaagtg
gagatcctccacgaccagttgctcgcacgcttcagtgctgatccggacttaaggcctcgc
gatgtgattgtgatggtcccggacatcgacagctacgcaccgcatattcgagcggtgttt
gctcagcttgaacgccacgacccgcgtttcattcccttcacactcgcagatcaaggccaa
cgcggccgtgacccgctactgattgctatcgaacacctgctcaaactgcccgacagccgt
ttccccgtgagtgagatcctcgacctgctggatgttcctgcactgcgcgctcgcttcggt
gtagaggaacgcgatctgccgaccctgcaccgttggatcgaaggcgcaggcattcgctgg
ggcatgaatgccgagcaacgcgcgggcctcggtctgccgcaggagctggaacaaaacagt
tggcgtttcggcctgcgacggatgctgctcggttatgccgtgggcagtgccggtgcttgc
gagggtatcgaaccctacgacgagatcggtggtctggacgccgcgctcatcgggcctttg
gtcgcgctgctggacgcattggagattgcgcaccaggagctcactcaacctgccgctccc
aaacaatggggctttcgattgcatgcgctggttcagttatttttcctggccagtaacgaa
catgacgactacgtattggcccaactcgaagagctgcgtgaaacctggcttgagacctgc
gagtcagttggtttgcatgatgagctgccgttgaccgtggtccgtgaagcctggctcgcc
ggcctcgaccaaggccgcctgtcccagcgtttcctggccggtgcggttaacttctgcacc
ttgatgcccatgcgcgcgatcccgttcaaactcgtctgcctgctgggcatgaatgacggg
gactacccgcgtgcacaaccgccactggactttgacctcatgggcagtgactaccgcccc
ggtgatcgctcccgacgcgaagatgatcgctatctgctgttggaagccctgttatcggca
cgggaccaactctatatcagctgggtcggtcgcagcattcgcgataacagtgaacgcccc
gcgtcggtactgattggccaattgcgcgatcatctggccagcggttggcgactgcatgat
gtcgacgaagatttgcttgaggccatcactcaggaacatccgttacaaccgttcagcgcc
cgctactttcatgaaggcgatcatttgttcagctacgcgaatgaatggcaggtgttgcat
caaaccggtgagccgtcgactgataccgaagtccttgatccatatgttcaggaggagccg
ctaagtctcggacaactgcaggacttcctgcgtaatcctgtgcggcattttttcagtcaa
cggctgaaagtgtacttcgaagcggctgaagtgcccctggctgatgaagagccattcgta
ctcgacgcgttgcaacgttacagcctcagcgacagcttgctcgaagcggcgctgggacat
ctggatagcaccgaccaggtactggaagcgcaggcaaaacgtctgcaaaacagtgggctt
ctgcccatggccggattcggcgaatgccttcagcgagagttgatcgaaccgttgccggat
ctgttgcagcgttatcagcagcttttggcgttatggccaacgcctctcaccaacgctttg
ccagtgagtctggagttgcaggggctgcgcctggaaggctggctcagcggcctgcatcaa
cgagcggacggtggtttgctatcaatcacgacaatccccaacagcatcggctcaatcaag
tctcgcaaatggcatcggctgacacggccatgggtcaatcatctggttgcctgcgccagt
ggtatggcaatgagcactgcattggtggccagcgacgacagtctgctgctcggtccgatg
ccggaggatgccgccttgcggattctgggcgacctgttaatggcttggcagacgggcatg
cgtcaaccattgccgattgcggtgaagaccggcttcgcatggcttggtcaaacagatccg
gtcaaagcccaggccgcagcccgcaaggcctatgaaggcgatggcctgaccaccgacggc
gagcgtcgcgaaagccccgcactcgcccgacagttcgccgacttcgactcgcttgccgca
gacgaaacgttcccggattggtgcaacgcgttgtaccggccgttgcttgaagcgccttgg
cgttcattgaacagcgaggagccgcgcgcatga
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