Pseudomonas frederiksbergensis: PFAS1_10715
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Entry
PFAS1_10715 CDS
T04786
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03030
DNA replication
pfk03410
Base excision repair
pfk03420
Nucleotide excision repair
pfk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFAS1_10715
03410 Base excision repair
PFAS1_10715
03420 Nucleotide excision repair
PFAS1_10715
03440 Homologous recombination
PFAS1_10715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfk03032
]
PFAS1_10715
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_10715
Enzymes [BR:
pfk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PFAS1_10715
DNA replication proteins [BR:
pfk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PFAS1_10715
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PFAS1_10715
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFAS1_10715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Obc1_cap
SDA1_dom
Motif
Other DBs
NCBI-ProteinID:
APV39792
LinkDB
All DBs
Position
2317675..2320446
Genome browser
AA seq
923 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGGTFRDEMFAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR
SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSALDVEGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLPIRGAKTLPAKLEEHKEM
AFLSYQLATIKIDVPLDIGLDDLQMGKPDHDKLAELYTLLEFKSWFEENQRDAKRSGQEV
VAPVAEEAAVGTELNYTTILTQADFDLWLKKLNDAKLFAFDTETTGIDAQQAQLVGLSFA
VQANEAAYIPLTHSYMGVPDQLDRDTVLRALKPILEDPSKLKVGQHAKFDMNILANCAIG
GDQSCGIIVQGIAFDTMLESYVLDSTATRHDMDSLALKYLNHTTTGFQDIAGKGAKQLTF
DQISLELAGPYAAEDADVTLRLHQTLLEKLNAIPSLSKVLSEIEMPLVPVLARIERQGAL
VDANLLGIQSVELGEKMVALEREAFAIAGEEFNLGSPKQLGVILYEKLGLPILSKTAKGQ
ASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAA
TGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLH
AFRNDLDVHKATAAEVFGVELADVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQ
AYIDRYFARYPGVLEYMERTRAQAAEQGFVETIFGRRLYLPEINAKNPALRKGAERTAIN
APMQGTAADIIKKAMIAVDSWLTASGLDAKVILQVHDELVLEVREDLVDQVRDEIRVHMS
DAAKLDVPLLVEVGVGNNWDEAH
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcccccctcgtcctggtggacggttcttcttacctgtaccgcgcctttcac
gccctcccaccactgaccacgtccaaaggtttgccaaccggtgcggtcaagggcgtattg
aacatgctcaagagtctgcgcaagcagtatccggacagtccgttcgctgtggtgttcgac
gccaagggcgggacattccgcgacgagatgttcgccgaatacaaggccaaccgcccgagc
atgcccgacgacatgcgggttcagatcgagccgctgcaccagagcgtgatcgccctgggc
tttccattgttgtgcgtcgaaggcgtcgaagccgatgacgtgatcggcaccctggcccgc
agcagtgcggcagccgaccgtccggtggtgatctccactggcgacaaggacatggcacag
ctggtcgacggccacattaccttggtcaataccatgaccggtagcgcgctggacgtggaa
ggcgtgaaggagaaattcggcgtcgctcccgagcagatcatcgattacctggcactcatg
ggcgattcttccgacaacattccgggcgttccgggcattggcccgaagaccgcttccggc
ctgttggtcggtgtgaacggcggcctgaccgagctctatgcgcagctcgacatcgtcccg
accttgccgattcgcggggccaaaaccctgccggccaagctcgaagaacacaaggagatg
gcgtttctctcctatcaattggcaaccatcaagatcgatgtgccgctggatatcggcctc
gacgacctgcaaatgggcaagccggatcacgacaagctcgccgagctctacaccttgctg
gagttcaagagctggttcgaagagaaccagcgcgacgccaagcgttccggccaggaagtc
gtcgcgccggtggctgaagaagcggctgtcggcaccgaactcaactacacaacgatcctc
acccaggctgatttcgacctgtggctgaagaagctcaacgacgccaagctgtttgccttc
gataccgaaaccaccggcatcgatgcgcagcaggcgcaactggtcggcctgtctttcgct
gtacaagccaacgaagcggcctacatcccgctgacccattcctacatgggcgtgccggat
cagctcgatcgcgacaccgtgctgcgcgcgctgaagccgattttggaagacccgagcaaa
ctcaaggttggccagcacgccaagttcgatatgaacatcctggccaactgtgccatcggt
ggcgatcagagctgcggcatcattgtgcaaggcatcgctttcgacacgatgctcgaatcc
tacgtgttggactccaccgcgacccgtcatgacatggacagcctggcgctcaagtacctg
aatcacaccaccaccggttttcaggacatcgccggcaaaggcgccaaacagctgacattt
gaccaaatctccctggaactggccggaccttacgctgccgaagacgccgacgtaacgctg
cgcctgcatcaaaccttgctggaaaaactcaacgccatcccgagcctgagcaaggtgctg
agcgaaatcgaaatgccgttggtgccggtgctggcgcggatcgaacgccaaggcgcgctg
gtcgatgccaacctgctgggcattcagagcgttgagctgggcgagaaaatggtcgccctc
gagcgtgaggcgttcgccattgccggggaagaattcaacctcggctcaccgaagcaattg
ggcgtgatcctgtacgaaaagctcggcctgccaatcctcagcaaaaccgccaagggccag
gcgtccaccgccgaagccgtgctggcggaactggccgaacaggatttcccgctgcccaaa
gtgctgatgcagtaccgctcgatgagcaagctgaaaagcacctacaccgatcgtctacca
gagcagatcaacccgcgcaccgggcgaattcatacctcttaccatcaggccgtcgcggca
accgggcgcttgtcgtccagtgacccgaacctgcagaacattccgatccgcaccgctgaa
gggcggcggattcgtcaggcgttcgtcgcccccaaaggctacaagctgctggcggcggac
tattcgcaaatcgaattgcgaatcatggctcacctggccaaggacgaaggtttgctgcac
gcgttccgcaacgatctggacgtgcacaaagccaccgccgcggaagtcttcggggttgaa
ctagcagacgtcaccaccgaccaacggcgcagcgccaaggcgatcaacttcggtttgatc
tacggtatgagcgcgtttggcctggccaaacagattggtgttgatcgcaagcaatcccag
gcctacatcgaccgttacttcgcccgctacccaggcgtactcgagtacatggagcgcacc
cgcgcccaggccgccgaacaaggtttcgtcgaaaccatcttcggtcgtcgcctgtacctg
ccggaaatcaacgcgaaaaacccggccctgcgcaaaggtgccgaacgcacggcgatcaac
gccccgatgcaaggcactgcggcggacatcatcaagaaagccatgattgccgtggacagc
tggctgacagcgtcaggcctcgacgccaaagtcatcctgcaggtgcacgatgaattggtg
ctggaagtacgtgaggatttggtcgatcaggtccgcgatgaaattcgcgtgcacatgagc
gacgcagcgaagcttgatgtgccgctgctggtagaggttggtgtaggaaataactgggat
gaggctcactga
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