Pseudomonas frederiksbergensis: PFAS1_11405
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Entry
PFAS1_11405 CDS
T04786
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03420
Nucleotide excision repair
pfk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PFAS1_11405
03430 Mismatch repair
PFAS1_11405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_11405
Enzymes [BR:
pfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFAS1_11405
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFAS1_11405
MMR (mismatch excision repair)
Other MMR factors
PFAS1_11405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_12
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
APV39922
UniProt:
A0A1P8EV26
LinkDB
All DBs
Position
complement(2475647..2477830)
Genome browser
AA seq
727 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAARVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSIL
SVTFTNKAAAEMRHRIEQLMGINPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDD
QQRLVKRVIRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYE
AACLRAGVIDFSELLLRALDLWRDHPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAK
GGDSLMVVGDDDQSIYGWRGAKIENIYQYSDDFPDAETIRLEQNYRSTAGILKAANALIA
NNTGRMGKELWTDGGEGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGI
GEKTVEAIRDHARHSDVSMWEAMRLLVANKGLTGRAAGALGAFIELIENLAAKCMDMPLH
LMTQTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARNFENAEEDEDLSPLAAFLGHA
SLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQNLVMTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSVSRPFGGGQ
QQSSSSLFGGSEIPDTGFSLGQTVRHSVFGDGVILNFEGAGAQARVQVNFSEGSKWLMLG
YAKLEAI
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctcccttctgctgaactccctcaacgatgcccaacgccaggccgta
gctgcccgcgtgggtcgtcagttggtcctggccggtgctggttccggtaaaacccgagtg
ctggtgcaccgtatcgcctggttgatccaggtcgaaaacgcctcgccccactcaatcctg
tcggtgactttcaccaataaggccgctgcggagatgcgtcaccgcatcgagcaactgatg
ggtatcaacccggccggcatgtgggtcggcaccttccacggcctggcgcaccgcttgttg
cgggcgcactggcaggaagccggcctgagccagacgttccagattctcgacagcgacgac
cagcaacgactggtcaagcgggtgatccgcgagctgggcctggacgagcagcgctggccg
gcccgtcaggcccagtggttcatcaacgggcagaaagacgaaggtctgcgtccacaacac
attcaagccagcggcgacctgttcctggcgaccatgcgcagcatttatgaggcctacgag
gccgcttgcctgcgcgctggcgtgatcgacttctccgaactgctgctgcgcgccctcgat
ctgtggcgcgatcatccgggcctgctcgcccattatcagaaacgcttccggcacattctg
gtggacgagttccaggacaccaacgccgtgcaatacgcctggttgcggctgctggccaag
ggcggcgacagcctgatggtggtcggcgacgacgatcagtcgatctacggctggcgcggc
gcgaaaatcgaaaacatttatcagtattccgacgacttcccggatgccgaaaccattcgt
ctagagcagaactaccgctccactgccgggattctcaaggctgccaacgccctgatcgcc
aacaacacgggacggatgggcaaagagctgtggaccgacggcggcgaaggcgaagcgatc
aatctatacgccgcgttcaacgaacacgatgaagcacgctacgtggtggaaaccatcgaa
agcgcgctgaaaaccggcttggcccgcagcgatatcgcgattttgtaccgttccaacgcc
caatcacgcgttttggaagaagccttgctgcgtgagcgcattccgtaccgcatctacggc
ggtcagcgcttcttcgaacgggcagaaatcaaaaacgccatggcctacctgcgcttgctg
gaaggtcgcggcaacgatgcagcgctggagcgggtgatcaacgttccggctcgcggtatc
ggcgagaaaaccgttgaagcgatccgcgaccatgcccgccacagcgatgtgtcgatgtgg
gaagccatgcgcttgctggtggctaacaaaggcctgaccggccgtgcggccggtgctctt
ggggcgttcatcgagttgatcgagaacctcgccgccaagtgcatggacatgccgctgcac
ctgatgacccagactgtcatcgagcagtccgggctgatcgcctatcacgaagcggaaaaa
ggcgagaaaggccaggcacgggtagaaaaccttgaggaactggtcagcgccgcgcgcaac
ttcgaaaacgctgaagaagacgaagacctgtcgccactggcggcattcctcggtcacgcg
tcactggaagccggagatactcaggccgacgagcacgaagacagcattcagctgatgacc
ttgcacagtgccaagggcctggaattcccttacgtgttcctggtgggcatggaagaaggc
ctgttcccgcacaagatgagccttgaagaaccgggtcgtcttgaagaggagcgccgtttg
gcctacgtcggaatcacccgggccatgcagaacctggtgatgacctatgcggaaacccga
cgcctgtacggcagcgagacttacaacaaggtgtcgcgtttcgtacgtgaagtgccgaaa
ggcctgatccaggaagtgcggctgtccaacagtgtcagccgtccgttcggcggcggccag
cagcagagctccagcagcctgtttggcggtagcgagatcccggacactgggttcagcctc
ggccagaccgtacggcattcggtgtttggcgacggtgtgatcctgaacttcgaaggtgcc
ggggcccaggctcgggtgcaggtgaacttcagcgaaggcagcaaatggctgatgctgggt
tacgcgaagctggaagcgatctag
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