Pseudomonas frederiksbergensis: PFAS1_13280
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Entry
PFAS1_13280 CDS
T04786
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFAS1_13280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfk03019
]
PFAS1_13280
Enzymes [BR:
pfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFAS1_13280
Messenger RNA biogenesis [BR:
pfk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFAS1_13280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
APV40278
UniProt:
A0A1P8EVQ2
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All DBs
Position
complement(2870090..2871970)
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AA seq
626 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPSKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGNLMGFDSSAVEAEKPEVRERPDVRNPRNPRGPRGDGPNGTGGGGG
RKDKGKDKGGKEKPAATGRGDRPAREHKPREGTPAREQQRPAPRAAAADRAPDEFLDDDI
DNFGNRVDYVPQAKPAQGRGRRPGAPAQGAAAGAGAPRTGGKPQGRQSGPRSSDGATTGT
PPAKRSGPRNGAPRDGQARREESRNRRPARADDQPRSEPAVQNPRGPAPKIIHKESKTDR
FPTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggctcagacaggtactggtaaaaccggcggcttcgcccttccgattctg
gagcggttgttccccaacggtcacccggacaaatcccagcgccacggtccgcgccaaccg
cgcgtactggtcctgacccctacccgcgaactcgcggctcaagtacacgagagcttcaag
gtttatgcccgtgacctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgcggtgtcgacgtgctggtagcctgccctggccgcctg
ctcgacctcgccggccaaggcagtgtcgatttgtcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtgaaaaaagtcctggcccgt
ctgccgagcaaacgtcagaacctgctgttctcggcgaccttctccaaagacatcaccgac
ctcgccggcaagctgctgcacaacccggaacgcatcgaagtcacgccgccgaacaccacg
gtcgagcggatcgaacagcgggtattccgtctgccagccaaccacaagcgttcgttgctg
gcgcacctgatcaccgctggcgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaaacacggcctcaccgccgtcgccatccac
ggtaacaagagccagaacgcccgcaccaaagccctggccgacttcaaggccggcgaagtg
cgcatcctggtcgccaccgacatcgccgctcgcggcctggacatcgaccagttgccacac
gtggtcaacttcgaactgccgaacgtcgacgaagattacgtgcaccgtatcggtcgtacc
ggccgtgccggtcgttcgggcgaggcgatctcgctggtcgctccggacgaagaaaagctg
ctcaaaagcatcgagcgcatgaccaagcagaagattgccgacggcaacctgatgggcttc
gattccagcgctgtagaagccgagaagcctgaagttcgcgagcgtccggatgtgcgtaac
ccgcgcaacccacgtggcccgcgcggcgacggtccgaacggcaccggcggtggcggcggt
cgtaaagacaaaggcaaggacaagggcggcaaggaaaaacctgctgccactggccgcggc
gatcgtccggcccgtgaacacaagccacgcgaaggcactccggcccgcgaacaacagcgt
ccagcgccacgcgctgccgctgcagaccgtgctccggacgagttcctggacgacgatatc
gataacttcggtaaccgcgtcgactatgtgcctcaagccaaaccggctcagggtcgtggc
cgtcgtccgggtgctccggcacaaggcgcagcagccggcgcaggcgctccgcgcactggc
ggcaagcctcagggtcgtcaaagcggcccgcgtagcagcgatggcgccaccaccggcacg
ccgcccgccaagcgcagcggcccacgcaacggtgctccacgtgacggccaggcccgtcgc
gaagagtcccgcaaccgtcgcccggctcgcgccgacgaccagccgcgttcggaaccggcc
gtgcaaaacccgcgcggcccggcaccgaagatcatccataaagagtcgaaaaccgatcgg
ttcccgactcctgagcaactggatcaactgccaggccgtccgcgcggcgaaaaaccagcg
ttgctgactcgcaatcgctga
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