Pseudomonas frederiksbergensis: PFAS1_13725
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Entry
PFAS1_13725 CDS
T04786
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03030
DNA replication
pfk03430
Mismatch repair
pfk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFAS1_13725
03430 Mismatch repair
PFAS1_13725
03440 Homologous recombination
PFAS1_13725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfk03032
]
PFAS1_13725
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_13725
Enzymes [BR:
pfk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PFAS1_13725
DNA replication proteins [BR:
pfk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PFAS1_13725
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PFAS1_13725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
APV40363
LinkDB
All DBs
Position
complement(2969860..2970567)
Genome browser
AA seq
235 aa
AA seq
DB search
MSLFSWLRPAGPSLPCDLQQRLQRLPLAAELGECSLREQRWVVLDLETTGLNLNKDRVLS
IGAVVIEDGAIDFSQQFERTLQCADMKLAPSVLIHGLGPSAIAAGSDPAQALVEFMEFVG
DSPVLAFHAPFDQHMLGRALKDHLGYKLQHPFLDVADIAPLLCPQAHIRDAGLDQWIDWF
KLEVFERHNASADALATAELALILFSRARQLQIHSPLNLQQRLSQWKRRQRVPSF
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgttttcatggctgcgtccagcaggtcccagccttccctgcgaccttcaacaa
cgcctgcaacgcttgccactggccgcagagctgggcgaatgcagcctgcgcgaacaacgc
tgggtggtgctcgacctggaaaccaccgggttgaacctgaacaaggatcgtgtgttgtcc
atcggcgcggtggtgatcgaggacggcgcgatcgacttcagccagcagttcgaacgcacg
ttgcaatgcgccgacatgaagttggcgcccagtgtgttgatccatggcctggggccaagt
gcgattgccgcgggcagtgatccggctcaggccctggtcgagttcatggagttcgtcggc
gacagcccggtgctggcgtttcatgcgccgttcgatcagcacatgctcgggcgcgcgctg
aaagaccatctgggctacaagttgcagcatccgtttctggatgtggctgatatcgcgccg
ctgctttgccctcaggcgcacattcgcgatgccgggctggatcagtggatcgactggttc
aaactcgaagtgttcgagcgccacaatgccagtgccgatgcgttggccaccgctgagctg
gcgttgattctgttcagccgggcgcggcagttgcagatccatagcccgttgaatctgcag
cagcggttgagtcagtggaaacgcagacagcgagtgccttccttctaa
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