Pseudomonas frederiksbergensis: PFAS1_14245
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Entry
PFAS1_14245 CDS
T04786
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PFAS1_14245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfk03021
]
PFAS1_14245
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_14245
Enzymes [BR:
pfk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PFAS1_14245
Transcription machinery [BR:
pfk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PFAS1_14245
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PFAS1_14245
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
IniB
Motif
Other DBs
NCBI-ProteinID:
APV40454
LinkDB
All DBs
Position
3082539..3086612
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHLSGET
LSLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGLKTLEVPLDYVLGR
TTAKAIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKMLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGYNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEILDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVAELRKFLDEIYNQIGGRNEDLDSFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtattgcgcggtgtaacttacgccgtacctttg
cgggtaaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatcccactgatgactgagaacggtaccttt
gtaatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgtggcaagacgcacagctccggcaaactgttgtactcggcgcgtatc
attccttaccgcggttcgtggttggacttcgagttcgacccgaaagactgcgtattcgtg
cgtatcgaccgtcgtcgcaagctgcctgcatcggtactgctgcgcgcgctcggctatacc
actgaagaagtgctcgacgcgttctacaccaccaacgttttccacctgagcggcgaaacc
ctcagtctggaactgattgcttcgcgtctgcgtggtgaaatcgctgtacttgatattcag
gacgagaagggcaaggtcatcgttgaggctggtcgccgtattactgcgcgtcacatcaac
cagatcgaaaaagccggtctcaagaccctggaagtgcctctggactacgtcctgggtcgc
actaccgccaaggccatcgtgcatccggcaaccggcgaaatcctggcagagtgcaacacc
gagctgaacaccgagatcctggcaaaaattgccaaggcccaggttgttcgcatcgaaacg
ctatataccaacgatatcgactgcggtccgttcgtctccgacactctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtccaggcgagccg
ccaaccaaagacgctgccgaaaccctgttcaacaacctgttcttcagtcctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgttgtgcaaagaagacatcgttgcggtgctgaagactctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgagaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctttcccagttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgtcgtgtttctgcactcggccct
ggcggtttgactcgtgagcgtgctggctttgaagtgcgtgacgtacacccgactcactac
ggtcgtgtatgcccgattgaaacgccagaaggtccgaacatcggtctgatcaactccctg
gccgcttatgcgcgcaccaaccagtacggcttcctcgaaagcccgtaccgcgtggtgaaa
gacgctctggtcaccgacgagatcgtgttcctgtccgccatcgaagaagctgatcacgtg
atcgctcaggcttcggccacgatgaacgacaagaaaatgctgatcgacgaactggtagct
gttcgtcacttgaacgagttcaccgtcaaggcgccggaagacgtcaccttgatggacgtt
tcgccgaagcaggtagtttcggtagcagcgtcgctgatcccgttcctcgagcacgatgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaagctgtaccaaccctgcgcgct
gacaagccgctggtcggtactggcatggagcgtaacgtagctcgtgactccggcgtttgc
gtcgtggctcgtcgtggtggcgttatcgattccgtcgacgccagccgtatcgtggttcgt
gttgctgatgatgaagttgaaaccggtgaagctggtgtcgacatctacaacctgaccaaa
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtgcgtaaaggtgat
cgggttcagcgtagcgacatcatggctgacggcccgtccaccgacatgggtgaactggcg
ctgggtcagaacatgcgcatcgcgttcatggcctggaacggttacaacttcgaagactcc
atctgcctgtcggaacgagttgttcaagaagaccgctttaccacgatccacattcaggaa
ctgacctgtgtggcacgtgacaccaagcttgggccagaggaaatcactgcagacatccca
aacgtgggtgaagctgcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagttggcgcaggcgacatcctggtaggtaaggtcactccgaaaggcgagactcaactg
actccggaagaaaaactgctgcgtgccatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgtgtgcctaccggcaccaagggaactgtcatcgacgtacaggtcttcacc
cgcgacggcgttgagcgtgatgctcgtgcactgtcgatcgagaagactcaactcgacgag
atccgcaaggacctgaacgaagagttccgtatcgttgaaggcgcaactttcgaacgtctg
cgatccgctctggtcggccacaaagccgaaggcggcgctggtctgaagaaaggtcaggac
atcaccgacgaaattctcgacggtcttgagcatggtcagtggttcaaactgcgcatggct
gaggatgctctgaacgagcagctcgagaaggctcaggcctacatcgttgatcgccgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccggatgatcgaagagcagcgcaaagtcgctgagcttcgtaaa
ttcctcgacgagatctacaaccagatcggcggtcgtaacgaagatctggatagcttctcc
gaccaggaaatcctggatctggcgaagaacctgcgtggcggcgttccaatggccactcca
gtgttcgacggcgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgcca
gaaagcggccagatgcagctgaccgacggccgtaccggcaacaagttcgagcgcccggtt
actgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccgtaccaagatgtac
aaaaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtctttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
