Pseudomonas frederiksbergensis: PFAS1_15350
Help
Entry
PFAS1_15350 CDS
T04786
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk00260
Glycine, serine and threonine metabolism
pfk00460
Cyanoamino acid metabolism
pfk00630
Glyoxylate and dicarboxylate metabolism
pfk00670
One carbon pool by folate
pfk00680
Methane metabolism
pfk01100
Metabolic pathways
pfk01110
Biosynthesis of secondary metabolites
pfk01120
Microbial metabolism in diverse environments
pfk01200
Carbon metabolism
pfk01230
Biosynthesis of amino acids
pfk01240
Biosynthesis of cofactors
pfk04981
Folate transport and metabolism
Module
pfk_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
PFAS1_15350 (glyA)
09102 Energy metabolism
00680 Methane metabolism
PFAS1_15350 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
PFAS1_15350 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
PFAS1_15350 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
PFAS1_15350 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
PFAS1_15350 (glyA)
Enzymes [BR:
pfk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
PFAS1_15350 (glyA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Aminotran_5
Cys_Met_Meta_PP
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
APV40661
UniProt:
A0A1P8EWR9
LinkDB
All DBs
Position
complement(3317235..3318488)
Genome browser
AA seq
417 aa
AA seq
DB search
MFSRDLTIAKYDADLFAAMEQEAQRQEEHIELIASENYTSPAVMEAQGSVLTNKYAEGYP
GKRYYGGCEFVDVVEQLAIDRAKELFGADYANVQPHAGSQANSAVYLALLQAGDTILGMS
LAHGGHLTHGASVSSSGKLYNAVQYGIDGNGLIDYDEVERLAVEHKPKMIVAGFSAYSQI
LDFPRFREIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLIL
ARANADIEKKLNSAVFPGAQGGPLEHVIAAKAICFKEALQPEFKTYQQQVVKNAQAMAGV
FIERGYDVVSGGTQNHLFLLSLIKQEISGKDADAALGKAFITVNKNSVPNDPRSPFVTSG
LRFGTPAVTTRGFKEAECKELAGWICDILADLNNEAVIDAVREKVKAICKKLPVYGA
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttcagccgtgatttgactattgccaagtacgacgccgatctctttgccgccatggag
caagaagctcagcgccaggaagagcacattgagctgatcgcttcggaaaactacaccagc
cctgcggtgatggaagctcaaggctcggtactgaccaacaagtacgccgaaggctacccg
ggcaagcgttactacggtggttgcgagttcgtcgacgtggtcgagcaactggccatcgac
cgtgcaaaagaactgttcggcgccgattacgccaatgttcagccacacgctggttcgcaa
gccaacagcgccgtttacctggctctgctgcaagcgggcgacaccatcctgggcatgagc
ctggcgcacggcggtcacctgacccacggtgccagcgtttcctcctccggcaagctgtac
aacgccgttcagtacggtatcgacggcaacggcctgatcgactacgacgaagtcgagcgc
ctggcggttgagcacaagccgaaaatgatcgtggccggtttctctgcctactcgcagatt
ctggacttcccgcgtttccgcgaaatcgctgacaaggttggcgcttacctgttcgtcgac
atggcccacgtggccggtctggtcgccgctggcgtctacccgaacccggtgcctttcgct
gacgtcgtgaccaccaccacgcacaagaccctgcgcggtccacgtggcggcctgatcctg
gctcgcgccaacgccgacatcgagaagaaactgaactccgccgtattcccgggcgcccag
ggtggcccgctggaacacgtgatcgccgccaaagcgatctgcttcaaggaagcgctgcag
cctgagttcaagacctaccagcaacaagtggtgaaaaacgcccaggccatggccggcgtg
ttcatcgagcgcggttacgacgtggtgtcgggcggtactcagaaccacctgttcctgctg
tcgctgatcaagcaggaaatctccggtaaagacgccgacgccgctctgggcaaagcgttc
atcaccgtgaacaagaactccgtgccaaacgatccacgctccccgttcgtcacctccggt
ctgcgcttcggtactccggctgtgaccactcgtggcttcaaggaagcagagtgcaaagaa
ctggccggctggatctgcgacatcctggcggacctgaacaacgaagcggtgatcgacgcc
gttcgtgagaaggtcaaggctatctgcaagaagctgccggtgtacggcgcttaa
DBGET
integrated database retrieval system