Pseudomonas frederiksbergensis: PFAS1_16290
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Entry
PFAS1_16290 CDS
T04786
Name
(GenBank) deoxyribodipyrimidine photolyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
pfk
Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_16290
Enzymes [BR:
pfk01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
PFAS1_16290
DNA repair and recombination proteins [BR:
pfk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
PFAS1_16290
Prokaryotic type
PFAS1_16290
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
APV40827
LinkDB
All DBs
Position
complement(3513791..3515245)
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AA seq
484 aa
AA seq
DB search
MNRADTPVQLIWLRSDLRLNDNTALSAAAARGPTVAVYLLSPEQWLEHDDAPCKVDFWLR
NLSELRSALDELNIPLLIRKASRWDEAPKVMLDLCQQLKVDAVHVNEEYGIHESRRDAAV
AETLNAHAIDFYSYLDQLLLKPGTVLTKTGTYFQVFSQFRKACYDRLRWSLPQRVPAPAV
QAPLAIDSDKIPSNVEGFATPSDSLRSLWPAGEAEAHRRLVTFADAQIDDYKNERDFPAK
PGTSQLSAYLTAGVISPRQCLHAALQSNQGEFESGKVGAVTWINELLWREFYKHILVGYP
RVSRHRAFRPETESLAWRDAPDELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAM
FLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSEKFD
SEGLFIKYWLPELAGLNKKDVHNPANLGGLFGVADYPSPIVNLSSSRQRALAAFKNLPSR
QSAG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgtgcggatacccctgtgcaattgatctggttgcgcagcgacttgcgcctcaat
gacaacaccgccctttcggccgctgcagcccgcggcccgactgtggcggtgtatctgctg
agcccggagcaatggctggaacacgatgatgcgccgtgcaaagtggatttctggctgcgc
aacctgagcgagttacgcagcgccctggatgagctgaacattcccttgttgatccgcaag
gcatctcgctgggatgaagcacccaaggtgatgctcgatctttgccagcagttgaaagtc
gacgcggtgcacgtcaacgaggagtacggcattcatgaaagccgtcgtgacgcagccgtg
gccgaaacactgaatgcccacgccatcgacttttacagctacctcgatcaattgctgttg
aaaccgggcaccgtactgaccaaaacgggcacttactttcaggtgttcagccagttccgc
aaggcgtgttatgaccgcctgcgctggtcgttaccgcagcgggtcccagcacccgccgtg
caggcgccgctggcgatcgacagcgacaagatcccgtcgaacgttgaaggcttcgcaacg
cccagcgacagcctgcgcagtctttggcctgccggggaagccgaagcccaccgccgcctc
gtcaccttcgccgacgctcagatcgacgactacaaaaacgaacgcgatttcccggccaaa
cccggcaccagtcagctgtcggcctatctcaccgccggggtgatttcaccccgtcaatgt
ttacacgccgcgctgcaaagcaatcagggcgagttcgaaagtggcaaggtcggcgccgtt
acctggatcaacgaattgctgtggcgcgagttctacaaacacatcctggtgggctaccca
cgggtctcgcgtcatcgcgccttccgcccggaaaccgaatccctcgcctggcgcgatgcc
ccggatgaactcctggcctggcaagaggcccgcaccggtctgccgattatcgacgcggct
atgcgccaactgcttgaaaccggctggatgcataaccgcctgcgcatggtagtggcgatg
ttcctgaccaagaacctgctgatcgactggcgtgaaggcgaacgttttttcatgcgtcat
ctgatcgatggcgacctggcggcgaacaacggtggctggcagtggagttcgtccactggc
accgattcggcgccgtacttccggattttcaacccgcttagccagtcggagaaattcgac
agcgaggggctgttcatcaagtactggctgccggaactggccgggctgaacaagaaggat
gtgcacaacccggcgaacctcggcggcctgttcggtgtggcggattatccgtcgccgatc
gttaatctgagcagctctcgccaacgggcactggccgcgttcaagaacctgccatcacga
caatctgccgggtga
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