Pseudomonas frederiksbergensis: PFAS1_16625
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Entry
PFAS1_16625 CDS
T04786
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk00470
D-Amino acid metabolism
pfk00550
Peptidoglycan biosynthesis
pfk01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PFAS1_16625 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PFAS1_16625 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pfk01011
]
PFAS1_16625 (murD)
Enzymes [BR:
pfk01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
PFAS1_16625 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
pfk01011
]
Precursor biosynthesis
Amino acid ligase
PFAS1_16625 (murD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MurD-like_N
Mur_ligase_M
Mur_ligase_C
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
APV40891
UniProt:
A0A1H5J7Y4
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All DBs
Position
3582153..3583499
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AA seq
448 aa
AA seq
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MSLIASDHFRIVVGLGKSGMSLVRFLANRGTSFAVADTRENPPELATLKRDYPHVEVRCG
ELDVEFLCRADELYVSPGLALATPALQAAAARGVKLSGDIELFARNAKAPIVAISGSNAK
STVTTLVGEMAAAAGKRVAVGGNLGTPALDLLSDDVELYVMELSSFQLETTDQLNAEVAT
VLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDALSRPLIGEGQPCWTFGLSKPD
FKAFGIREEDGEKYLAFEFQNLMPVRELKIRGAHNQSNALAALALGHAVGLPFDAMLASL
RTFAGLEHRCQWVRDLNGVSYYNDSKATNVGAALAAIEGLGADIDGKLVLIAGGDGKGAE
FKDLRDPVAANCRAVVLMGRDAELIAQAIGDAVPLIRVNSLIEAVEQCRAIAEKGDAVLL
SPACASFDMFKNYEDRGHQFVRAVEDLA
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
gtgtctctgatcgcttctgaccacttccgcatcgttgtcggcctcggcaagagcggcatg
tccctggttcgcttcctggcgaaccggggcacgtcgtttgctgtcgccgacacgcgggaa
aatccaccggaactggccacgctcaagcgtgactatccgcacgtggaagtgcgttgtggc
gagctggacgtcgaattcctgtgccgcgccgacgagctctacgtgagccccggcctggcg
ctggcgaccccggccctgcaggctgccgccgcccgtggcgtgaaattgtccggtgacatc
gagttgttcgcgcgtaacgcgaaggcgccgatcgtcgccatcagcggttccaacgcgaaa
agcaccgtcaccacactggtcggcgagatggctgcggcggccggcaagcgtgtcgccgtc
ggtggcaacctcggtacgccggcgctggacctgctcagcgacgacgtcgagctgtacgtg
atggaactgtcgagcttccagctcgagaccaccgatcagctcaacgccgaagtggcgacc
gtgctcaacgtcagcgaagaccacatggaccgctatagcggcctgccggcttatcacctg
gccaagcaccggatcttccggggtgccaggcagtttgtggtcaaccgtcaggatgccttg
agccgtccgctgattggcgaaggccagccatgctggaccttcggtttgagcaagcctgat
ttcaaggcattcggtatccgcgaagaagacggcgagaagtacctggccttcgaattccag
aacctgatgccagtgcgcgagctgaaaattcgcggtgcccacaaccagtccaacgccttg
gcggcattggccctgggccacgccgtcggcctgccgttcgacgcgatgctggcgagcctg
cgcaccttcgccgggctcgagcatcgctgccagtgggtccgtgacctgaatggcgtgagc
tactacaacgattccaaagccaccaacgtcggtgccgcactggcggccatcgaaggcctg
ggcgcggacatcgacggcaaactcgtgctgatcgccggtggcgatggcaagggtgccgag
ttcaaggacttgcgtgatccggtggcggccaactgccgcgccgtggtgctgatggggcgt
gacgccgagctgatcgctcaagccatcggcgatgccgtgccactgattcgcgtcaactcg
ctgatcgaagcggtcgagcaatgccgcgccatcgcagagaagggcgacgccgtgttgttg
tcgccggcctgcgccagtttcgacatgttcaagaattacgaagaccgtggtcaccagttc
gtccgcgctgtggaggacctggcatga
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