Pseudomonas frederiksbergensis: PFAS1_16825
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Entry
PFAS1_16825 CDS
T04786
Name
(GenBank) dipicolinate synthase
KO
K03530
DNA-binding protein HU-beta
Organism
pfk
Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfk03032
]
PFAS1_16825
03036 Chromosome and associated proteins [BR:
pfk03036
]
PFAS1_16825
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_16825
DNA replication proteins [BR:
pfk03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PFAS1_16825
Chromosome and associated proteins [BR:
pfk03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PFAS1_16825
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PFAS1_16825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-CCDC81_bac_2
HU-HIG
HU-CCDC81_euk_2
SSPI
HTH_IclR
HU-DNA_bdg
NTS
Motif
Other DBs
NCBI-ProteinID:
APV40929
UniProt:
A0A1J0EJ01
LinkDB
All DBs
Position
3625683..3625964
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AA seq
93 aa
AA seq
DB search
MALTKDQLIADIAEAIDAPKTTARNALDQLGQIVADQLENGGEITLPGIGKLKVTERPAR
TGRNPSTGAAIEIAAKKVIKLVVAKGLTDAVNK
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atggctcttactaaagaccaactgatcgccgacatcgctgaagctatcgacgcgccaaaa
accaccgcgcgtaacgctctggaccaactgggccaaatcgttgccgatcagctggaaaac
ggcggcgaaatcactctgccaggtatcggcaaactgaaagtgactgagcgtcctgcccgt
accggccgcaacccttcgactggcgctgccatcgaaatcgctgccaagaaagttatcaag
ctggttgtggccaaaggcctgaccgacgctgttaacaagtaa
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