Pseudomonas frederiksbergensis: PFAS1_16880
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Entry
PFAS1_16880 CDS
T04786
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
pfk
Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfk03019
]
PFAS1_16880
03009 Ribosome biogenesis [BR:
pfk03009
]
PFAS1_16880
03036 Chromosome and associated proteins [BR:
pfk03036
]
PFAS1_16880
Enzymes [BR:
pfk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
PFAS1_16880
Messenger RNA biogenesis [BR:
pfk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PFAS1_16880
Ribosome biogenesis [BR:
pfk03009
]
Eukaryotic type
90S particles
RNase
PFAS1_16880
Prokaryotic type
rRNA processing factors
PFAS1_16880
Chromosome and associated proteins [BR:
pfk03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
PFAS1_16880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
Motif
Other DBs
NCBI-ProteinID:
APV40940
UniProt:
A0A1P8EXJ6
LinkDB
All DBs
Position
3638429..3639118
Genome browser
AA seq
229 aa
AA seq
DB search
MSVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFDRFP
LAREGQLSRLRARLVKGETLAVLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIG
AIYLDAGMDMARERVLAWLAGEFEGLTLVDTNKDPKTRLQEFLQSRGCELPRYEVVDIQG
EPHCRTFFVECEITLLNEKSRGQGVSRRIAEQVAAAAALIALGVENGHD
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgtctccttaagccgtctcgagcgtcagctcggttacaccttcaaggatcaggaa
ctgatggtcctggccctgactcaccgcagctttgccgggcgtaacaacgaacgcctggaa
ttcctcggtgatgccatccttaactttgtcgctggcgaggcgctgttcgatcgcttcccg
ctggcccgcgaaggtcagttgtcgcgcttgcgcgcacgcctggtgaaaggcgagaccctg
gccgtactggctcgtggtttcgatctgggcgaatacctgcgcctgggttccggtgaattg
aaaagcggcggtttccgtcgcgagtcgattctggccgatgcccttgaagcgctgatcggt
gcgatctacctggatgccggcatggacatggcgcgcgaacgcgtgctggcgtggctggcc
ggggagttcgaaggcttgacgctggtcgacaccaacaaagatccgaaaacccgcctgcaa
gaattcttgcagtcccgtggttgcgaactgccgcgttacgaagtggtggatatccagggt
gagccgcattgccggacgttcttcgtcgaatgtgaaatcaccttactgaatgaaaaaagc
cgaggtcagggtgtgagccgtcgtattgccgaacaggtagcggccgctgcagcactgatt
gccctgggcgtggagaatggccatgactga
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