Pseudomonas frederiksbergensis: PFAS1_17505
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Entry
PFAS1_17505 CDS
T04786
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
pfk
Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfk03016
]
PFAS1_17505
Enzymes [BR:
pfk01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
PFAS1_17505
Transfer RNA biogenesis [BR:
pfk03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PFAS1_17505
Prokaryotic type
PFAS1_17505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
APV41062
LinkDB
All DBs
Position
3778612..3779670
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AA seq
352 aa
AA seq
DB search
MNELQLLGPRAYGEALGTAVLKATAEDFQVDEVLDIPLSGDGEHLWIWVEKRGLNTEEAA
RRIAKAAGVPLRTVSYAGLKDRQALTRQWFSVQLPGKADPDLSAAENDTLKILKTGRHKR
KLQRGAHSANGFTLRLTQFAGDKAAIDERLQLIAKQGIPNYFGAQRFGFDGGNVVDARAW
AARKALPEQRNVRSRLLSTARSFLFNQVLAARVADGSWQRALVGDLLAFTDSRSFFPAGV
AECSDPRLAILDLHPTGPQWGEGDSPATGVVHELEQAIATREADLRDWLINAGMSHERRI
LRLPIGGLTWHYPEPDILQLEFVLPAGCFATVLVRELVDLVPVGQTDSPCVF
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgcaattgctcggcccgcgggcctatggcgaagcccttggcaccgccgta
ctgaaagccacggcggaagatttccaggtcgatgaagtcctcgatattcccctcagcggc
gacggcgaacacttgtggatctgggtggaaaagcgcggtctgaataccgaagaagcggca
cggcggatcgccaaggcggcaggcgtgccattgcgaaccgtcagttacgcgggcctcaag
gatcgtcaggcgctgactcgccaatggttcagcgtgcaactaccgggcaaggctgatcct
gatctgtcggcggcggaaaacgatacgctgaagatcctcaagaccggccggcacaaacgc
aagctgcaacgcggtgctcactcggccaatggcttcacgttgcgactgacgcaattcgct
ggcgacaaagcggcgatcgacgagcgtctgcaactgatcgccaagcaaggtattcccaat
tatttcggcgcccagcgtttcgggtttgacggcggtaacgtggtcgatgcccgtgcctgg
gcggcgcgtaaagcgttgccggaacagcgcaacgtgcgttcgcgtctgctctctacggcg
cgcagttttctgtttaatcaggtgttggcggcgcgtgtcgccgatgggagctggcagcgt
gctctggttggcgatctgctggccttcaccgacagtcgcagcttctttccggcaggtgtt
gccgagtgcagcgacccgcgcctggcgattctcgatctgcacccgaccggtccgcagtgg
ggcgaaggtgactcgccggccactggcgttgtccatgaactggagcaggcaatcgccact
cgcgaagcggacttgcgtgattggttgattaacgccggtatgagccacgaacgtcgcatc
ctgcggctgcccattggtgggttgacgtggcattatcccgagcctgacattctgcaactg
gaattcgtcctcccggccggatgcttcgccaccgtattggtgcgcgagctcgttgatctg
gtgccggtggggcagacggacagcccatgcgtattctga
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