Pseudomonas frederiksbergensis: PFAS1_17980
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Entry
PFAS1_17980 CDS
T04786
Name
(GenBank) RNA polymerase-binding ATPase
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pfk
Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfk03021
]
PFAS1_17980
Transcription machinery [BR:
pfk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
PFAS1_17980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
APV41152
LinkDB
All DBs
Position
complement(3871389..3874235)
Genome browser
AA seq
948 aa
AA seq
DB search
MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPG
DSITHFEGWKLTVQEVDDVDGLLVYHGLNGHNEVVTLPETQLSNFIQFRLASDRLFAGQI
DPLAWFSLRYNTLEHTSRQLQSALWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG
LGKTIEAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDA
ANPFEDTQLALVALEWLVEDEKAQDALFAAGWDLMVVDEAHHLVWHEDKASPEYSLVEQL
AEVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLHAFRAESENYRPVAEAVQELLDK
GRLSPEAHKTIHGFLGNEGEALLTAVNDGDIEASARLVRELLDRHGTGRVLFRNTRAAVQ
GFPERKLHPYPLPCPDEYLELPLGDHAELYPEVSFQAQPDANEEERWWKFDPRVEWLIDT
LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGA
QVLICSEIGSEGRNFQFSHHLVLFDLPSHPDLLEQRIGRLDRIGQKHIIELHVPYLETSP
QQRLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLENADDGEWQALIDEARAERERME
AELHTGRDRLLELNSGGAGEGDALVEDILEQDDQFALPIYMETLFDAFGIDSEDHSENAL
ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGN
TAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSARVSF
ETLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKIFPRHAERVAEAQRRLAADTDEEL
ARLTALQAVNPTVRDSELVALRKQREQGLAMLDKAALRLEAIRVLVAG
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagtatcaaccggggcaacgctggatcagtgacagcgaagccgagctgggt
ttaggcaccgttctggcacaggacggccgcttgttgaccgtgctctacccggccactggc
gagactcgccagtacgcgctacggaatgcgcccctcacccgcgtgcggttttcgccgggt
gactcgatcactcacttcgaaggctggaaactgaccgtacaagaagtcgacgacgtcgac
ggcctgctggtttaccacggcctcaacgggcacaacgaagtggttaccctgccggaaacc
caactgtcgaacttcatccagttccgtctggccagcgatcgtttgttcgccgggcagatc
gacccgctggcctggttctccctgcgatacaacaccctggaacacaccagccgccaattg
cagtccgcgctttggggcctcggtggcgtgcgtgcgcaacccatcgcgcaccagctgcac
atcgcccgtgaagtcgccgaccgcattgcaccgcgggttttgctggcagacgaagtgggc
ctgggtaaaaccatcgaagccggtctggtgatccatcgccaactgctctcgggccgcgcc
aaccgcgtgctgatcctggttccggagaacctgcagcaccagtggctggtcgagatgcgc
cgccgcttcaacctgcaagttgcgctgttcgacgaagaacgcttcatcgaaagcgatgcc
gccaacccattcgaagacacccaactcgcgctggttgcactcgaatggctggtggaagac
gagaaggcccaggacgcgctgttcgccgccggttgggacctgatggtcgtcgacgaagcg
caccacctggtctggcatgaagacaaggccagccctgaatactcgctggttgaacaactg
gccgaagtcattcccggcgtcctgctgttgactgcgaccccggaacaactgggtcaggac
agccactttgcgcgtctgcgcctgctcgatccgaaccgtttccatgacttgcacgccttc
cgcgccgagagcgaaaactatcgcccagtggccgaagccgttcaggagctgctggacaag
ggccgcctgtcgcctgaagcgcacaagaccattcacggtttcctcggcaacgaaggcgaa
gcgctgctgaccgccgtcaacgatggcgacatcgaagccagcgcccgtctggtccgcgaa
ctgctcgaccgccacggcaccggccgtgtgctgttccgcaacacccgcgccgccgtgcag
ggattcccggagcgcaagctgcatccgtatccgctgccttgccctgacgaatacctcgaa
ctgccgctgggcgatcacgccgagctgtacccggaagtcagtttccaggcccagccggac
gccaatgaagaagaacgctggtggaaattcgacccgcgcgtcgaatggctgatcgacaca
ctgaagatgctcaagcgcaccaaagtgctggtgatctgcgcccacgccgaaaccgccatg
gacctggaagacgccctgcgcgtgcgctccggcatcccggccacggtcttccacgaaggc
atgaacatcctcgagcgtgaccgcgccgccgcctacttcgccgacgaagaatttggcgcg
caagtgctgatctgctcggaaatcggcagtgaaggtcgtaacttccagttttcgcaccac
ttggtgctgttcgatctgccttcgcacccggacctgctggagcagcgtatcggtcgtctg
gaccggatcggccagaagcacatcatcgaactgcacgtgccgtatctggaaaccagcccg
caacagcgcctgttccagtggtaccacgaagcgctgaacgcgttcctcaatacctgcccg
accggcaacgccctgcagcatcagttcggcccgcgcctgctgccgctgctggaaaatgcc
gacgacggcgagtggcaagcgctgatcgacgaagcccgcgccgagcgcgagcgcatggaa
gccgagctgcacaccggccgtgaccgcttgctggaactcaattccggcggtgctggcgaa
ggtgatgcactggtcgaggacatccttgagcaagacgaccagttcgccctgccgatctac
atggaaaccctgttcgacgccttcggaatcgacagcgaagaccattcggaaaacgcgctg
atcctcaagccgagcgaaaaaatgctcgacgccagcttcccgctgggcgacgacgaaggc
gtgaccatcacgtacgaccgcaatcaggcgctgtctcgcgaagacatgcagttcattacc
tgggaacacccgatggttcagggcggcatggacctggtcttgtccggttccatgggcaat
accgccgtggcactgatcaagaacaaggcgctgaagcctggcaccgtattgctcgaactg
ctctacgtcagcgaagtggttgcgccgcgctcgctgcaactgggccgttacctgccgccg
gccgccctgcgttgcctgctcgatgccaatggcaacgacctgtcggcccgggtgtcgttc
gaaaccctaaacgatcagctggaaagcgtgccgcgtgccagcgccaacaagttcatccag
gcccagcgcgatcagctgacgccacggatcaacgccggcgaagagaagatcttcccgcgt
cacgccgagcgcgtggctgaggcacagcgtcgcctggccgccgacaccgacgaagaactg
gcgcgcctgaccgcgttgcaagcggtcaacccgacggtgcgcgacagcgaactggtcgcc
ttgcgcaagcaacgcgagcaaggcctggccatgctcgacaaagcggcgctgcgactggaa
gcgattcgggtgttggtggcgggctaa
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