Pseudomonas frederiksbergensis: PFAS1_18605
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Entry
PFAS1_18605 CDS
T04786
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pfk
Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfk03016
]
PFAS1_18605
Enzymes [BR:
pfk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PFAS1_18605
Transfer RNA biogenesis [BR:
pfk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PFAS1_18605
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
APV41269
LinkDB
All DBs
Position
3993601..3994734
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AA seq
377 aa
AA seq
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MAIDIHWIRDNDSLGQLCAEWQQLPFVALDTEFMRVDTFYPIAGLLQIGDGVRAYLIDPL
TIDNWQPLAALLENPAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGFSMGY
SRLVQEVLGIDLPKGETRSDWLQRPLSDTQISYAAEDALHLAEVFVQLRPKLSDDKYAWV
LEDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARARDLPRNRIV
REHSLWPLARTQPDNLGALAKIEDMHPRTVRQDGEFLLDLIKRSGSVSPDQWPPAVPEPL
PMDAAALVKQLRAIGQAEAERLNIAPELMLRKKTLEALLKSGYPNGPYQLPDSLRGWRRE
LMGQALLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacaacgatagcctcggtcagttatgtgccgag
tggcagcagctgccattcgttgccctcgacaccgaattcatgcgggtcgacaccttttat
ccgattgcaggcctgctgcagatcggcgatggcgtacgcgcttacctgattgacccgctg
accatcgacaactggcagccgctggccgcgttgctggaaaacccggccgtggtcaaagtc
gtccatgcgtgcagcgaagacctcgaagtcctgctgcgcctgaccggcagcctgccggcg
ccgctgttcgacacccaactggccgccgcttacctgaacctgggtttctccatgggctat
tcgcggctggtgcaggaagtgctcggcatcgacctgcccaagggcgagacccgttccgac
tggctgcaacgtccactttccgatacccaaatcagctacgctgccgaagatgctttgcat
ttggcggaagttttcgtacagcttcgtccgaagctttctgatgacaagtacgcctgggtc
ctggaagacggcgccgagctggtggccaacctgcgccgcgaagttgatccgtatgaggtc
tatcgcgaagccaagctggcctggaagctttctcgcgcccagctcgccgtgttgcgtgaa
ctgtgcgcctggcgcgagcgcgaagcccgcgcccgtgacctgccgcgcaaccgcatcgtg
cgtgagcattccctgtggccgttggcacggactcagccggacaacctcggcgcgttggca
aaaatcgaagacatgcacccgcgtaccgtgcgtcaggacggcgagtttctgcttgatctg
atcaagcgctctggcagtgtgtcgcctgatcaatggccgcctgcggtgccggagcctttg
ccgatggacgccgccgcactggtcaaacagctgcgtgcgatcggccaggccgaagcagaa
cgcttgaacattgcgccggaactgatgctgcgcaagaaaaccctggaagcgctgctcaag
agcggctatcccaacggtccttaccaattgcctgattcgctgcgtggctggcgccgcgaa
ttgatgggccaggcgctgctcgacagcctggccaccgccggagaacagccttga
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