Pseudomonas frederiksbergensis: PFAS1_18765
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Entry
PFAS1_18765 CDS
T04786
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pfk
Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfk03019
]
PFAS1_18765
Enzymes [BR:
pfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PFAS1_18765
Messenger RNA biogenesis [BR:
pfk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PFAS1_18765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
AAA_25
nSTAND3
NACHT
T2SSE
Dicer_dsRBD
SLFN-g3_helicase
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
APV41297
LinkDB
All DBs
Position
4022159..4026070
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPSIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVTRMQASCDQVLARR
ASLPVIRYDDSLPIAAKRDEIKAALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAFERSERKSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICIRLYG
EEDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDVDSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLSLNKEPADYPKLHKAVLSGLLSQIGQKTDEGDYLGARQRRFWIHPSSG
LGKKRPQWLMAAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPIDPVTSRELFIREGLVRGEIQSKAKCLTANAQLLEQLDEL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRVNSQKDPQLLIMREEDVLARE
ASEVTALHYPDTLHIGDLELALSYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGVI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRMTFAEGSLPQALGRELLRMTGARVSDEA
WAEASQQVDSHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKNQQPVE
PKVFAAVAEKTQQKIAGLSMTVYPALVEESGTVKEGRFSTPAEAEFQHRRALQRLLMQQL
AEPAKFLRSKLPGLTELGLMYRDMGRIDSLVEDILLASLDSCILDGEDPLPRDGAGLASL
AERKRGGWTEHAERLAKLTLEILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPMQWLKELPRYLKAVEQRFEKIGAQVQRDRVWSGELSGLWTQYQTRANKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLNKQWTQVEP
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgaatcgccttccatcgacaaactgctgaaaaacctcgatcacgccatgctc
gccgaccgccaccggctgcggcggcagttgcttgagctgcgtaaaaaacctgacgaggcc
aagctggcccaatgggtgacgcgcatgcaggcgtcctgtgatcaggtgctggcacggcgg
gccagcctgccggtgattcgttacgacgacagtttgccgatcgccgccaagcgcgacgaa
atcaaggcagcgctgctcaagcatcaggtgctgatcattgccggtgaaaccggttcgggt
aaaaccacccagttgccgaagatctgcctggaaatcgggcgcggtcagcatggcctgatc
ggccacactcagccccgtcgaatcgccgcccgcagcgtggcgagccgggtcgccgaagaa
ctggcgacgccgttgggtgcgctggtcggctatcaggtgcggttcgaggaccagagcgat
tccaacaccctgatcaaactgatgaccgacggcatcctgctggcggaaacccagaacgac
cgctacctcgaacgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctgaac
atcgacttcctgctcggttacctgaaaaccctgttgccgcgtcgtccagacctgaaagtc
atcatcacttcggcgaccatcgacctggagcgcttctccaagcacttcgatgacgcgccg
attgtcgaagtctccggccgcaccttccccgtggaaacctggtaccgcccgctgaccctg
gagcaggacgaagagggcaaccgcgtcgaggacgacttgaccgtggatcaggcgatcctc
gccaccctcgacgaaatcgccgcgttcgaacgcagcgagcgcaagagccctggcgacgtg
ctggtgttcctgcccggcgagcgcgagattcgcgacgcggcggacatgctgcgcaaggcc
cagctcaagcacaccgaaattctgccgctctacgcacgactgtcgccggctgaacagcag
cggattttccagtcgcacccaggacgccgcgtggtgttggcgaccaacgtcgcggaaacc
tcgctgacggtgccgggcattcgttacgtaatcgacagcggcaccgcgcgcatcagccgt
tacagctaccgcgccaaggtccagcgcctgcccatcgaagcgatttcccaggccagcgcc
aaccagcgtaaaggtcgctgtgggcgtgtcgagccgggtatttgcattcgcctgtacggc
gaagaagatttcattggccggccggaatttaccgatccggaaatcctgcgcaccaacctc
gcggcggtgattttgcagatgttgcatctgcgcctcggcgagatcaccgatttcccgttt
atcgagccgccggatggcaaagccatcagtgacggtttcaacctgctgcaagaactctcg
gcggtcgaccgcaatagccagctgacgccgcttggccgccaattggcgcgcttgccagtg
gacccgcggatgggccgcatgttgctggaagcggcgaaactcggcagcttgcaggaagtg
ctgatcgtcgccagcgccatgtcgattcaggacccgcgcgagcgtccgccggaacgtcag
caagcggcggatcaggctcacgcgcaatggaaagacgtggactcggacttcgccgggctg
gtcaatctgtggcgcggtttcgaagaacagcgccaggccctgaccgccagcccgctgcgc
aattggtgccgcaagaatttcctgaattacctgcgtctgcgcgaatggcgcgactcccat
cggcagttgagcctgatctgccgcgacatgcagttgagcctcaataaagagccggcggat
tatccgaaactgcacaaagccgtgctctcggggctgctcagccagatcggccagaaaacc
gatgaaggcgattacctcggtgcgcgtcagcggcgtttctggattcacccgtcatcgggc
ctcggtaaaaagcgtccgcaatggctgatggccgccgaactggtggaaaccaccaagctc
tacgcgcggatggttgccaaaatcgacgccgactggatcgagccgctggccgggcacctg
atcaagaaaaaccacttcgaaccccattgggagaagaagcgcggtcaagtcgtggccttc
gagcagatcacattgtttgggctgatcgtggtcggtcgccggccggtgcattacgggccg
atcgaccctgtcacgtcccgtgagctgttcattcgtgaaggtctggtacgcggcgagatt
cagtccaaggccaagtgcctgaccgccaatgcgcaactgctggaacagctcgacgaactg
gaagccaaggcgcgccgtcgcgacattctggccgacgaagaaaccctgttcgccttctac
gatgcgcgactgccggcggagatccaccagacggcgaccttcgatagctggtatcgggtc
aacagccagaaagacccgcagttgctgatcatgcgcgaagaagacgtgctggcccgcgag
gcgagtgaagtcaccgctttgcattacccggacaccttgcacatcggtgatctggagttg
gcgctcagttaccacttcgaaccgaaccacccgcgcgacggcgtgaccctgcgcgtgccg
gcgccgttgttgccgatgctgccgccggagcgcctggaatggctggtgccgggcgtgatc
gaggccaagtgcattgcgctggtgcgcaacctgcctaaagccctgcgcaagaatttcgta
ccggtgccggacttcgtcaaagccgcattgcagcgcatgactttcgccgagggctcgttg
cctcaagcgctgggccgcgaactgctgcgcatgaccggtgcgcgggtcagcgatgaagcc
tgggccgaagcatcgcagcaggtcgacagtcatttgcggatgaacctggaaatcgtcgac
ggccaaggcaagttcctcggtgaagggcgtgatctggcggaactgaccgcacgctttgcc
gaagccagtcaggccgcactggccgtgccgcaaaccgcgaaaaaccagcaaccggttgag
ccgaaagtgtttgccgccgtcgccgagaaaacccagcagaagatcgcggggctatcgatg
acggtgtatccggcgttggtggaggagagcggcacggtcaaggaaggacgtttctcgacg
ccggccgaagccgagtttcaacatcgccgcgccttgcagcgattgctgatgcagcaactg
gccgaaccggcgaagttcctgcgcagcaagttgccggggttgaccgaactgggcctgatg
taccgcgacatggggcgcatcgacagtctggtcgaagacatcctgctggccagcctcgac
agctgcattctcgacggcgaagacccgctgccacgggatggcgccgggttggcgtcattg
gccgaacgcaaacgcggtggctggaccgagcacgccgagcgcttggccaagctgacgctg
gagattctcaagctctggcacggcctgcaaaaacgctttaagggcaagatcgacctggcg
caagccgtggcgttgaacgacatcaagcagcagctcagtcatctggtgtatccgggcttc
gtccgggaaaccccgatgcagtggctcaaggagttgccgcgttatctgaaagcggtcgag
cagcgcttcgagaaaatcggcgcccaggtgcagagggatcgggtctggagcggcgagttg
tctggcctgtggacgcaatatcaaacccgcgccaacaaacatgcccaggaaggcaaacgc
gacccgcaattggagctctatcgctggtggctggaggaataccgggtttccctgttcgcc
caacaactggggaccaaggtgccgatctccgacaagcgcctgaacaagcagtggacccag
gtcgaaccctga
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