Pseudomonas frederiksbergensis: PFAS1_18965
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Entry
PFAS1_18965 CDS
T04786
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFAS1_18965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfk03019
]
PFAS1_18965
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_18965
Enzymes [BR:
pfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFAS1_18965
Messenger RNA biogenesis [BR:
pfk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFAS1_18965
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PFAS1_18965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
HTH_23
Sigma70_r4_2
GerE
Motif
Other DBs
NCBI-ProteinID:
APV41336
LinkDB
All DBs
Position
4073774..4075900
Genome browser
AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLA
VVVSPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQ
PRMLAFLQSLEISLFAIDEAHCVSQWGHDFRREYLQLGQLAELFPNVPRIALTATADKRT
REEIVDRLHLQDAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLAERRSDAGIVYCLSRKK
VDEVAVFLSEQGFPALPYHAGLPNDTRAHHQKRFLNEEGLIMVATVAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQTLLAYFDEDMPEPCGHCDNCVDGVQTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKDNEKIRSFGHQHLSVYGVGKAMGESEWRSLFRQLVARGLADIDLE
GYGGLRLSDTCRPLLKGEVTLELRRDLKPQTTAKSSKSQASQLVRGEEREQWEALRALRR
KLAEEHGVPPYVIFPDSTLLEMLRSQPTSLAEMATVSGVGARKLERYGEAFLEVLGGQVE
APKVVADLRHELITLARAGMTPLQIAGQLQCSEKNVYTLLAEAIGKQQLSLEQALDLPEE
LMGEIQDAFLDGEGELPPVSEIAALFAGRVPEGVLYCVRAALQSEFEI
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcgtcctcaaggacatcttcggctacgacagtttccgtggc
cgtcagggtgcaatcattgagcgcgtggccagtggcggcgacgccctggtgctgatgcct
accggtggcggcaagtccttgtgctttcaggtgccggcgctgttgcgcgaaggcctggcg
gtggtggtgtcgccgctgatcgccctgatggacgaccaggtcgccaccctcgaagagctg
ggcgtcgcggcggcggcattgaactccacgctcagcgccgagcaacagcgcgacctggcg
gcacggatcaagcgaggtgaagtgaaaatgctttatctcgcgcccgagcgtctggttcag
ccacggatgctggcgttcctgcaaagtcttgaaatttccctgttcgccatcgacgaagcc
cactgcgtgtcccaatggggtcacgacttccgccgcgaatacctgcaattgggccagttg
gcggaattgttccccaacgtcccgcgtatcgccctgaccgcgactgccgacaagcgaacc
cgggaagaaatcgtcgaccgccttcatcttcaggatgccgagcgtttcctgtcgagtttc
gaccgccccaacatcttctatcgcatcgtgcccaaggagcagccgcgcaagcagttgctg
gcgttcctcgccgagcggcgcagcgatgccggtatcgtctattgcctgtcgcgcaaaaag
gttgatgaggtagcggtgttcctcagcgagcaaggtttcccggcgctgccttaccatgcc
ggtctgcctaatgacacgcgggcccatcaccagaagcgcttcctcaatgaggaaggcctg
atcatggtggccaccgtggcgttcggcatgggcatcgacaagcccaacgtgcgcttcgtc
gctcacctcgatttgccaaaatccctagaggcttactaccaggaaaccggtcgcggcggc
cgtgacggtctgccggcggatgcctggatggcctacggcctgcaagacgtggtgatgctc
aagcagatgttgcagaactccgagggtgacgagcgccacaagcgtctggagcagcacaag
ctcgacgccatgctctcgctctgcgaagaaacccgctgccgtcgccagacgttgctggcc
tattttgacgaagacatgcccgaaccctgcggccattgcgacaactgcgtcgatggcgtg
cagacctgggacgccaccgagccagcccgtcaggcactgtcggcgatctaccgcaccggc
caacgctatggcgtcggccatctggttgacgtgttgctgggcaaagacaatgaaaaaata
cgcagcttcggtcatcagcatttgtcggtatacggtgtaggcaaagcgatgggggagagt
gaatggcgctccttgttccgacagctggttgcccgtggtctggcggacatcgacctggaa
ggctacggcggcctgcgcctgagcgacacctgtcgaccgctgctcaagggcgaagtgacc
ctggagctgcgtcgcgacctgaagccgcaaaccacggccaaaagcagcaagagccaggcg
agccaactggttcgcggcgaagagcgcgaacagtgggaagccttgcgcgccctgcgtcga
aaactcgccgaagagcatggcgtgccgccgtacgtcatcttccccgactcgacactgttg
gaaatgctccgcagccaaccgacctcgctggcggaaatggccacggtcagcggcgttggc
gcgcgcaagctggagcgctacggcgaggccttcctcgaagttctcggcgggcaagtcgag
gcaccgaaagtggtggccgacctgcgccacgaactgatcaccctggcccgagccggcatg
accccgttgcagatcgccggtcagctgcaatgctcggaaaagaacgtctacaccctgctc
gccgaagcgattggcaagcagcagttgtcgctggagcaagcgctggatctgcctgaagag
ttgatgggcgaaatccaggatgcgttcctcgacggcgaaggcgaattgccgcctgtgtcg
gagattgccgcactgttcgccgggagagtaccggaaggcgttttgtactgtgttcgggcg
gcgctgcaatccgaattcgagatttag
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integrated database retrieval system
