KEGG   Pseudomonas frederiksbergensis: PFAS1_18975
Entry
PFAS1_18975       CDS       T04786                                 
Name
(GenBank) peptidoglycan-binding protein LysM
  KO
K08086  pilus assembly protein FimV
Organism
pfk  Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:pfk00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pfk02044]
    PFAS1_18975
Secretion system [BR:pfk02044]
 Type II secretion system
  Pilin secretion/fimbrial assembly protein
   PFAS1_18975
SSDB
Motif
Pfam: TPR_14 ATG16 TPR_19 TPR_2 DUF1664 DUF3450 PspA_IM30 Alkyl_sulf_dimr T6SS_VasJ DUF3708 TM_ErbB1 PPR_2 COG6_N ADIP
Other DBs
NCBI-ProteinID: APV43192
LinkDB
Position
4076583..4078361
AA seq 592 aa
MLDSWHVALRCCARLFLVGGAVTYSALAPALGLGEITLHSALNQPLRADIALEDAAGLAE
GEFSVSLATADEFSRAGIDRVFFLNNLKFTPVLRGNRSLIRVSSSKPVNEPFLNFLVQLN
QPNGRVLREYTVLIDPPGSPGIVPVTDEPVTDVQSSDFPTVAPAVEKPPATKSKKSLPPP
AAAPVSDPVAEQLAASVLQNQQLQASIDELTAKLQAQEELVAGQKKQVTELQTQLAEITT
AAAEPVAPVVVAPAPAIAEEPEATNWGLIVGLLAVAVLVLLGLFVRRQRQQVQALPDALP
VLPSRHEPVLDRTVEPVAQSSTVQPATESGEESPAGDVLEGVEIYLAYGRFSEAAGLLRE
ALSKEPQRTDLAVQLLEVLGKQGDAPAYEAQENNLRDAGYDLQELQNIRARHPKLGSAAP
LAAAASMTPPKAAIAEAAPNDEFQLNLDDLSMDSSWDLISPFEHSPSAAKPSSESAPVEP
PFVSNLHVLPEVFEMPDEPILDEPELEWVAEPDSQSLDDAFLNEFNDPGQSLELEPLNLE
PAEPSSADKLEKAQTCIDDGDVNSAIELLNELLEEGNEPLKQTARNLLAGLS
NT seq 1779 nt   +upstreamnt  +downstreamnt
atgctcgatagttggcacgtggctttacggtgttgcgccaggctgtttctggtcggtggc
gctgtcacttactcggcattggcgcccgcgttgggcttgggtgaaatcaccctgcattcg
gcgttgaatcagccgttgcgcgccgacatcgcactggaagatgccgcaggtctggcggag
ggggagttctcggtcagcctggcgacagcggatgaattcagtcgcgccggcatcgatcgg
gtgttcttcctcaataatctgaaattcacgccggtcctgcgcggcaaccgcagcctgatc
cgggtgagctccagcaagccggtcaatgagcctttcctgaatttcctggtgcagctcaat
caacccaatgggcgggtgctgcgcgaatacacggtgctgatcgatccgccgggttcgccg
gggattgttcccgtgactgacgaaccggttaccgacgttcaatcctctgacttcccgacg
gttgcgccggccgtcgagaaaccacctgcgacgaaaagcaaaaaatcgctaccccctcct
gccgccgcgccggtaagtgatcctgtcgccgaacaattggccgccagcgtgctgcaaaac
cagcagttgcaagcaagcatcgatgaactgactgcgaagcttcaggcccaggaagagctg
gtcgccgggcagaaaaagcaggtgacggaactgcaaacccaattggcggaaatcacgacc
gcagcggcggagccggttgcccccgtcgttgtggctcccgcgccggccattgctgaagag
cctgaggccactaactgggggctgattgtcgggttgctggcggtggcggttctggtgttg
ctgggattgttcgttcggcgtcaacgacaacaggttcaggcattgcctgacgccctgcct
gttttgccgtcacggcatgaaccggtgctcgatcgcactgtagaaccggttgcccaatca
tcaacggtgcaaccggcaactgaatcgggcgaagagtcgcccgcaggcgatgtgcttgaa
ggggtcgaaatctacctggcctatggccgtttttccgaagcagccggtttgttgcgtgag
gcgctgagcaaggagccgcaacgcacggaccttgccgttcagctgttggaagtcttgggt
aaacagggtgacgcacccgcctatgaagcacaggaaaacaacctgcgtgacgccggatac
gacctgcaagaacttcagaatattcgcgcccgacacccgaaactgggcagtgcagcaccg
ttggccgctgcagcgtcaatgactccccccaaggctgcgattgccgaagcggcgcccaac
gatgagttccagttgaacctggatgacctgtcaatggattcgagctgggacctcatcagc
ccttttgagcactcgccgtccgccgcgaaaccatcgagcgaatccgccccggtcgagccg
ccttttgtctcgaacctgcacgtcttgcccgaggtgtttgaaatgcccgacgagccgata
ctggacgagcccgaacttgaatgggtcgccgagcctgactcgcagtctctggatgacgcc
tttctcaacgagttcaacgatcctggccagtcgctggaactggaaccgctgaatctggag
ccggccgaaccgagcagcgccgacaaactcgaaaaagcccagacctgcattgacgacggc
gatgtgaacagcgccatcgaactgctcaacgagttgctcgaggaaggcaacgagccgctt
aagcagacagcccggaacctgctcgccgggctatcatag

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