Pseudomonas frederiksbergensis: PFAS1_19195
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Entry
PFAS1_19195 CDS
T04786
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk02020
Two-component system
pfk02025
Biofilm formation - Pseudomonas aeruginosa
pfk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PFAS1_19195
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
PFAS1_19195
09142 Cell motility
02040 Flagellar assembly
PFAS1_19195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pfk03000
]
PFAS1_19195
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pfk02035
]
PFAS1_19195
Transcription factors [BR:
pfk03000
]
Prokaryotic type
Helix-turn-helix
Other families
PFAS1_19195
Bacterial motility proteins [BR:
pfk02035
]
Flagellar system
Flagellar assembly proteins
Others
PFAS1_19195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
HTH_50
AAA_7
nSTAND3
AAA_22
bpMoxR
AAA
GAAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
APV41380
LinkDB
All DBs
Position
4120367..4121842
Genome browser
AA seq
491 aa
AA seq
DB search
MWRETKILLIDDDSVRRRDLAVILNFLGEENLPCGSHDWQQAVGSLSSSREVICVLIGTV
NAPGALVGLLKTLSTWDEFLPVLLMGDNSSVDLPEDQRRRVLSTLEMPPSYSKLLDSLHR
AQVYREMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGK
EVVARNLHYHSKRRDAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG
TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSVDVRIIAATHKNLESMIEVGTFR
EDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHGWPG
NVRELANLVERMAIMHPYGVIGVVELPKKFRYVDDEDEQLVDSFRSDLEERVAINGHTPD
FSAGAMLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGM
SRRDGDEQADD
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgtgaaaccaaaattctgctgattgatgacgatagcgtccgccgccgcgacctg
gcggtgattttaaattttcttggcgaagaaaatttaccctgcggtagccatgactggcag
caggctgtcggctcattgtcatcaagtcgtgaagtaatctgtgtcctcatcgggacggtc
aatgctcctggtgcacttgtgggcttgctaaagacactctcaacctgggatgagttcctt
ccggttttgttaatgggcgataattcttccgttgacttgcctgaagaccagcgtcgccga
gtgctttcgaccctcgaaatgccacccagctacagcaaattgctcgactccctgcaccgt
gcccaggtctatcgcgagatgtacgaccaggcccgcgagcgcggtcgtcaccgtgaaccc
aatcttttccgcagtcttgtcggcaccagccgggcgattcaacacgtccgtcagatgatg
cagcaagtcgccgacaccgacgccagtgtgctgatcctcggtgagtccgggaccggcaag
gaagtggtcgcgcgtaacctgcactatcactccaagcgtcgtgacgcgccgttcgtgccg
gtcaactgcggggcgattccggccgagttgctggaaagcgaactgtttggccacgagaag
ggtgccttcaccggggcaatcaccagccgcgccgggcgttttgaactggccaatggcggc
acgctgttcctcgatgaaatcggcgacatgccgctgccgatgcaggtcaagttgctgcgc
gtattgcaggagcgcaccttcgaacgcgtgggcagcaacaagacccagagcgtcgatgtg
cggatcatcgcggcaacccacaagaacctcgaaagcatgatcgaggtcggtaccttccgc
gaagacttgtactaccgcctgaatgtgtttccgattgaaatggcgcctctgcgcgagcgt
gtcgaagacattccgctgctgatgaacgagttgatctcgcgcatggagcacgagaagcgt
ggttcgatccgtttcaactcggcagcgatcatgtcgttgtgccgtcacggttggccgggc
aacgtccgcgaactcgccaacctggtggagcgcatggcgatcatgcatccgtatggggtg
atcggcgtggtcgagttgccgaagaaattccgctatgtcgacgacgaagatgagcaactg
gtcgacagctttcgcagcgatcttgaagagcgcgtggctatcaacggccatactccggac
ttctccgccggtgccatgctgccgccggaaggtctggacctgaaggactacctcggtggt
ctggagcaagggctgattcagcaggcgctggatgatgccaatggcatcgtggcgcgcgcg
gcagagcggctgcgtattcgtcgcaccacactggtggaaaagatgcgcaagtacggtatg
agccgtcgtgacggtgatgaacaggcggatgattga
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