Pseudomonas frederiksbergensis: PFAS1_19205
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Entry
PFAS1_19205 CDS
T04786
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K10943
two-component system, response regulator FlrC
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk02020
Two-component system
pfk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PFAS1_19205
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PFAS1_19205
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
pfk02022
]
PFAS1_19205
02035 Bacterial motility proteins [BR:
pfk02035
]
PFAS1_19205
Two-component system [BR:
pfk02022
]
Other families
FlrB-FlrC (polar flagellar synthesis)
PFAS1_19205
Bacterial motility proteins [BR:
pfk02035
]
Flagellar system
Flagellar assembly proteins
Others
PFAS1_19205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
AAA_2
MCM
AAA_16
AAA
HTH_20
MerR
AAA_3
HTH_30
AAA_19
FleQ
HTH_24
nSTAND3
HTH_11
Sigma70_r4_2
HTH_23
HTH_28
Myosin_head
DUF2249
AAA_22
HTH_17
HTH_Mga
ATPase
NPHP3_N
AAA_7
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
APV41382
LinkDB
All DBs
Position
4123182..4124567
Genome browser
AA seq
461 aa
AA seq
DB search
MAIKVLLVEDDRALREALADTLLLAGHDFKAVGSAEEALAAVGAEAFNLVLSDVNMPGMD
GHQLLGLLRTRQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALLDLVARHALG
SLGATEGEGPVAFEPASAQLLELAARVARSDSTVLISGESGTGKEVLARYIHQHSHRVSQ
PFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFEQADGGTILLDEISEMPLGLQA
KLLRVLQEREVERVGARKPITLDIRVVATTNRDLAGEVAAGRFREDLYYRLSVFPLAWRP
LRERTADILPLAERLLAKYVNKMKHAAATLSPEAQACLIGYPWPGNVRELDNAIQRALIL
QQGGLIQPEDFCLAGPVACAPLPALAPTSLRIVEVESESAGALGDDLRRREFQMIIDTLR
SERGRRKEAAERLGISPRTLRYKLAQMRDAGMDVEAYLFAT
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcaaggttttactggtcgaggatgaccgcgcgctacgcgaagcactggccgat
acgctgttgctcgccggtcacgatttcaaagctgtcggctcggcggaagaggcgctggca
gcggtcggtgccgaggcgttcaacctggtgctgagcgacgtcaacatgccgggcatggac
ggccatcaactgctcggattgctgcgcactcgtcagccgcagctgccggtgttgctgatg
accgctcacggtgctgtcgagcgggcggtcgatgccatgcgtcagggcgcggcggattat
ctggtcaagccattcgagcccaaagccttgctcgatctggtggcgcggcatgcgctgggc
agcctcggcgcgaccgaaggcgaggggcctgtagcgttcgagccggccagtgcgcaattg
ctggaattggccgcacgggtggcgcgcagtgattccacggtgttgatctccggcgagtcc
gggaccggcaaggaagtgctggcgcgttacattcatcagcactctcaccgcgtcagtcag
ccgttcattgcaatcaactgtgcagcgatcccggacaacatgctcgaagccaccttgttc
ggtcacgagaagggttcgttcactggcgccatcgccgcgcaggccggcaagttcgagcaa
gcggatggcggcacgatcctgctcgatgaaatctccgaaatgcccctgggtctgcaggcc
aagttactgcgggtattgcaggagcgggaagtcgagcgagtcggcgctcgcaagccgatc
acgctggacattcgcgtggtcgccaccactaaccgagacctggccggtgaagtggctgcg
gggcgttttcgtgaagacctttactatcgcctgtcggtgtttccactggcctggcgtccg
ttgcgcgaacgtaccgccgacatcctgccgttggctgagcgtcttctggccaagtacgtc
aataaaatgaagcatgccgcggccacactgtcgcccgaggctcaggcgtgcctgatcggt
tatccatggccgggtaatgtgcgtgagctggataacgcgattcagcgggcgcttatccta
cagcagggcggattgattcagcctgaagatttctgtctggccgggccggtcgcctgtgcg
ccgttgccagccttggcgccaacgtccctgcgaatcgtggaggtcgaatccgagtcggcc
ggggcgctgggggatgacctgcgtcgccgtgagttccagatgatcatcgacactttgcgc
tccgagcgcggccgccgcaaagaagccgccgagcgcttgggcatcagcccgcgcaccttg
cgatacaagctggcgcaaatgcgcgacgccggaatggatgtggaagcgtacctgttcgcc
acctga
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