Pseudomonas frederiksbergensis: PFAS1_20755
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Entry
PFAS1_20755 CDS
T04786
Name
(GenBank) hypothetical protein
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03030
DNA replication
pfk03430
Mismatch repair
pfk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFAS1_20755
03430 Mismatch repair
PFAS1_20755
03440 Homologous recombination
PFAS1_20755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfk03032
]
PFAS1_20755
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_20755
Enzymes [BR:
pfk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PFAS1_20755
DNA replication proteins [BR:
pfk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PFAS1_20755
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PFAS1_20755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNAX_ATPase_lid
DNA_pol3_tau_5
AAA
RuvB_N
AAA_22
AAA_5
AAA_16
AAA_14
ResIII
TIP49
AAA_18
AAA_30
AAA_2
AAA_19
PIF1
TsaE
nSTAND3
AAA_7
HasA
Rad17
Mg_chelatase
SKI
zf-CXXC
AAA_24
Herpes_Helicase
Motif
Other DBs
NCBI-ProteinID:
APV41665
LinkDB
All DBs
Position
4469829..4471868
Genome browser
AA seq
679 aa
AA seq
DB search
MSYQVLARKWRPRSFREMVGQTHVLKALINALDSQRLHHAYLFTGTRGVGKTTIARIIAK
CLNCETGITSTPCGECSVCREIDEGRFVDLIEIDAASRTKVEDTRELLDNVQYAPSRGRF
KVYLIDEVHMLSSHSFNALLKTLEEPPPYVKFILATTDPQKLPATILSRCLQFSLKNMTP
ERVVEHLTHVLSVENVPFEEDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVMAADVRAM
LGTLDHGQVYDVLHALIEGDAKALLEAVRHLAEQGPDWNGVLSEILNVLHRVAIAQALPE
GVDNGHGDRDRVLALAQALPAEDVQFYYQMGLIGRRDLPLAPDPRGGFEMVLLRMLAFRP
ADTADAPRQPLKTVGISQATVDSANSVAAAQVVAPVVAVAVAPVAPEPVAPVVAPEPVVD
AAPVEAVVDLPWNDPIEPEVVQQPAVEPVLETASEQPELPPMPLPTPDSAVPDAPEWAAA
PIPEPSVADVDAATPGMDLDDEPPLDEDYIEPDMESAYSYLDELASEHTAEPAPEAEPEP
AAMPATGLAAQWLELFPKLPISGMTGSIAANCTLIAVEGDNWLMHLDPAHSALFNATQQR
RLNDALNQFHGRTLTLRMELIKPEQETPAQAASRRRANRQREAEESIHGDPFIQQMMQQF
GAVVRNDTIEPVETLVTQG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgagttatcaggttcttgcacgtaaatggcgtccgcgctcgttccgcgaaatggtcggc
cagacccatgtgctcaaggctctgatcaatgccttggacagccagcggctgcaccacgcc
tatctgtttaccggcacccgcggggtcggcaagaccactatcgcgcggatcatcgccaaa
tgcctgaactgtgaaacaggcatcacttcaacgccttgcggcgagtgctcggtgtgtcgc
gagatcgatgaaggccgcttcgtcgacctgatcgagatcgacgccgcgagccggaccaag
gtcgaggatacccgcgaactgctggacaacgttcagtacgcgccgagccgcgggcgcttc
aaggtctacctgatcgacgaagtgcacatgctctccagccattccttcaatgcgctgttg
aaaacccttgaagagccgccgccctacgtcaagttcatcctggcgaccaccgatccgcag
aaacttccggcaacgattctttcgcggtgcctgcagttctctttgaaaaacatgactccc
gagcgcgtggtcgagcatttgacccacgtgctgagtgtcgagaacgtgccgttcgaagag
gatgcactgtggttgctgggccgtgctgccgacggttcgatgcgcgacgccatgagcctg
accgaccaggccattgccttcggtgaaggcaaagtcatggctgccgacgtacgggcgatg
cttggcacgctcgatcacggtcaggtctacgatgtcctgcatgcgctgatcgaaggcgac
gccaaggccttgctcgaagccgtccgtcacctggccgaacaaggcccggactggaacggc
gtgctttcggaaattctcaacgtgctgcaccgtgtcgccatcgcccaggccctgcctgaa
ggcgtcgacaacggtcatggcgaccgtgaccgggtgctggcattggcccaggcattgccg
gccgaagacgtgcagttctattaccagatgggcctgatcggtcgccgcgacttgccgctg
gcgccggaccctcgcggcggcttcgaaatggttctgttgcggatgctggcgttccgcccg
gcagacaccgcggacgccccgaggcaaccgctaaagacagtggggatcagccaggccaca
gttgattccgcaaattcagtggctgccgcgcaggttgttgcgccggtagtcgctgtggca
gttgcacccgttgcgcctgagccggttgcgcccgtcgttgcgcctgagcctgtcgttgac
gcagcaccggtcgaagccgttgtcgatttgccctggaacgacccgatagaacccgaagtc
gttcagcagcctgccgtcgagccggtgctggaaaccgcgagcgaacagcccgaattgccg
ccgatgcctttgccgacgccggacagcgcggtgcctgacgcgccggagtgggccgctgcg
ccgattccagagccgtcggtggccgacgtcgatgccgcgacgccgggtatggacctggac
gacgagccgccgctggacgaggactatatcgagccggacatggagtcggcttacagctac
ctcgatgaactggccagcgaacacaccgccgagcctgcgccggaagccgaacctgaaccg
gccgccatgccggccaccggtctggcggcgcaatggctggagctgttcccgaaactgccg
atctccggcatgaccggcagcatcgccgccaactgcacgctgatcgccgtcgagggtgac
aattggctgatgcacctcgacccggcccacagcgcgctgttcaacgcgactcaacagcgc
cgcttgaacgatgccttgaaccagtttcacgggcgtacgctgaccttgcgcatggagctg
atcaagcccgagcaggaaaccccggcccaggccgcgtcccgtcgccgtgcgaaccgtcag
cgcgaagccgaagagtcgattcacggtgatccgttcatccagcaaatgatgcagcagttc
ggtgcggtggtccgtaacgatactattgaacctgtcgagaccctggtcactcagggctaa
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