Pseudomonas frederiksbergensis: PFAS1_20955
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Entry
PFAS1_20955 CDS
T04786
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pfk
Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfk03032
]
PFAS1_20955
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_20955
Enzymes [BR:
pfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PFAS1_20955
DNA replication proteins [BR:
pfk03032
]
Prokaryotic type
DNA Topoisomerases
PFAS1_20955
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PFAS1_20955
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
APV41702
LinkDB
All DBs
Position
4516283..4518916
Genome browser
AA seq
877 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLTPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGAT
VRFDVAREKGEAFKPLNETQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVTMARTYIEGEFGKKYLPENPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
TVGAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDAMKLIKLDPTQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLAES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESAEGGMRANQPVMT
DIPCVLCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCSGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNATCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVMEIVPHKDEIDPKYHFLCEAPKKDPDGLPAVIRYSRKTK
EQYVQTEVEGKPTGWKAYYDGGKWTVEDKRPAKTAKA
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggtaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaagagccagccgccaagcgcggcaaggccgccgcgggtgaa
ggtccggtgctcacgccgaaagagaaggcgcgcaagcagctggtctcgcgcatgggtgtc
gatcccgatcatggctggaaagccaagtacgagatcctcccgggcaaggaaaaggtcatc
gaagagctacgccggctcgccaaggatgctgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcttggcacctgcgcgaagccatcggtggtgatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggcgattcaggaagccttctccaag
ccgggcgagctggacatcgaccgtgtaaacgcccagcaggcgcgtcgtttcctcgaccgc
gtggtgggttacatggtttcgccgctgctgtgggccaaagtcgcccgtggcctgtccgcc
ggtcgcgtgcaatcggttgccgtgaagctggtggttgagcgtgagcgtgaaattcgcgcg
ttcaacccggaagagtactgggaagttcatgccgacctcggcaccgccaagggcgcgacc
gtgcgttttgatgtggcgcgcgagaaaggcgaagccttcaagccgctgaacgaaacccag
gccatggccgcactggaaaagctcaaggcttccagctacagcatcgtcaagcgcgaagac
aaaccgaccagcagcaagccgtcggcaccgttcatcacttccaccctgcaacaggccgcg
agtaaccgcctgggcttcggcgtgaagaaaaccatgatgatggctcagcgtttgtacgaa
gccggctacatcacttacatgcgtaccgactctaccaacctctcggttgatgccgtgacg
atggcgcgtacttatattgaaggtgagttcggcaagaaatatctgccggaaaacccgaac
gtctacagcagcaaggaaggcgcacaagaggctcacgaagcgattcgtccctccgatgcc
aataccgagccaagcaagctgtcgggcatggaacgcgatgctgagcggctctatgagctg
atctggcgccagttcctcgcttgccagatgctgccggcccaatacctgtcgaccactgtc
accgtcggtgccggcgatttcgagctgcgcgccaagggccgcatcctgaagttcgacggt
tatacccgcgtcatgccgcaaatcgccaagccgggcgatgacgacgtgctgccggacatg
gctcagggcgacgcgatgaagctgatcaagcttgatccgacccagcacttcaccaagccg
ccggcgcgttactcggaagcgagcctggttaaagaaatggaaaaacgcggcatcggtcgt
ccttcgacctacgcggcgatcatttcgacgatccaggatcgtggctacgttgcgctgcac
aaccgtcgtttctactcggaaaagatgggcgacatcgttaccgaacgtctggccgaaagc
ttctccaatctcatggactacggctttactgccggcatggaagagaatctcgatgacgtg
gcccagggtgagcgcgactggaagaacgtactcgatgagttctatggcgacttcaagaag
aagctcgaggtagccgaaagcgccgaaggcggaatgcgcgccaatcagccggtaatgact
gatattccgtgtgtgttgtgcggtcgtccgatgcagattcgtaccgcatcgaccggcgtg
ttcctcggctgctcgggctacagcctgccgccgaaagagcgctgcaaggctacggtcaac
ctggtgccgggcgacgaaatcgcggcggacgacgaaggtgaatcggaatcgctggtgttg
cgtggcaagcatcgctgcccgatctgcagcacggcgatggacgcttacctgctggatgag
aaacgcaagctgcacatctgcggtaacaacccggattgctctggctacgaaatcgaagag
ggcacctatcgcatcaagggctacgaaggtccgagcctggagtgcgacaaatgcggcagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaatgcgacgtgc
aagaacacccgcaaactgctgaaaagcggtgatgcagcgccgccgaagatggatccggtg
aagatgcctgagctgaaatgcgaaaaggtcaacgacacctacatcctgcgcgacggtgct
tccggcctgttcctggcggccagtcaattcccgaaaaaccgcgagacccgtgctccgctg
gtcatggaaattgtgccgcacaaggatgagatcgatccgaagtaccacttcctctgcgaa
gcgccgaagaaagatccggacggcctgcctgcggtgatccgttatagccgtaaaaccaaa
gagcagtacgtgcagactgaagtcgagggtaagccgactggctggaaagcctactacgac
ggcggcaagtggacagttgaagacaagcgcccggcgaagactgccaaggcttaa
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