Pseudomonas frederiksbergensis: PFAS1_21230
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Entry
PFAS1_21230 CDS
T04786
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PFAS1_21230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_21230
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFAS1_21230
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PFAS1_21230
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
APV41753
UniProt:
A0A1H4Z550
LinkDB
All DBs
Position
4577121..4579136
Genome browser
AA seq
671 aa
AA seq
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MSEFQLVTRFEPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQIQRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY
TRNDMEFARATFRVRGDVIDIHPAESDFEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLDAVEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRESGQAPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEFESISPQTIFVSATPGNYEAEHAGRVVEQLVRPTGLVDPQ
IEIRPALTQVDDLLSEIGKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIMEGATV
PGSRSKKRKGMAKAAEESAKYEAELRSPGEVAKRIKALEEKMYALARDLEFEAAAQMRDE
IGKLRERLITV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaattccagctagtcacccgtttcgagcccgccggcgatcagccggaagccatc
cgccttatggtcgagggcatcgaagccgggctggcgcaccagacgttgctcggtgtgacc
ggctcgggcaagaccttcagcatcgccaatgtaatcgcccagattcagcgtccgaccctg
gtgctggcgccgaacaagaccctggctgcgcagttgtacggtgagttcaaggcattcttc
ccgaacaatgccgtcgaatacttcgtttcgtattacgactactaccagcccgaagcctac
gtgccgtcatcggacacgttcatcgagaaagacgcctcgatcaacgatcacatcgagcag
atgcgattgtccgcgaccaaggcgctgctggagcgcaaggacgcgatcatcgtcaccacg
gtgtcgtgcatctacggtctgggcagtccggaaacctatttgaagatggttctgcacgtg
gatcgcggcgacaagctcgatcagcgtgcattgctgcgtcgcctggcagacctgcaatac
acccgcaacgacatggagtttgcccgtgcgaccttccgggtccgcggcgatgtgatcgat
atccacccggcggaatccgatttcgaagcgatccgcatcgagctgttcgatgacgaagtc
gagagcctgtccgccttcgatccgctgaccggtgaagtgatccgcaagctgccgcggttc
acgttttatccgaaaagccactacgtcaccccgcgagaaaccctgctggatgccgtcgaa
gggatcaaggtcgagttgcaggaacgcctggaatacttgcgctccaacaataaactggtg
gaagcccagcgcctggagcagcgcacccgtttcgacctcgagatgatccttgagctgggt
tactgcaacggcatcgaaaactactcgcgctacttgtccggtcgcgaatcgggccaagcg
ccgcccaccttgtttgattacctgccggccgatgccctgctggtgatcgacgaatcccat
gtcagcgtgccgcaggttggcgccatgtataagggcgaccgttcgcgtaaagagacgctg
gtggaatacggtttccgcctgccgtccgcactggataaccggccgatgcgcttcgacgag
ttcgaaagcatcagcccgcagacgatctttgtctcggccacgccgggcaattacgaggca
gagcacgccggtcgcgtggtcgagcaactggtccgcccgactggcctggtggacccgcaa
atcgaaatccgtccggcgttgacccaggtcgacgatttgctttcggaaatcggcaagcgc
gtcgcgctggaagagcgggtgctggtcaccacgttgaccaagcgcatgtctgaagacttg
accgattacctggccgaccacggtgtgcgggtgcgttatttgcactccgacatcgacacg
gtggagcgggtcgagatcatccgtgacttgcgtctgggcaccttcgatgtgctggtgggg
atcaacctgctgcgtgaaggcctggacatgccggaagtgtcgctggtggcgatcctcgat
gcggacaaggaaggcttcctgcgttccgagcgctcgctgatccagaccattggccgggcg
gcgcgcaacctcaatggtcgggcgattctttatgcggatcgcatcaccggttccatggag
cgggcgatcggcgagaccgagcgtcgtcgcgacaagcagattgccttcaacctggccaat
ggcatcacgcccaagggcgtgttcaaggacgttgccgacatcatggaaggcgccaccgtg
ccgggttcgcgcagcaagaagcgcaaaggcatggccaaggccgccgaggaaagcgccaag
tacgaagcggaattgcgttcgccgggggaagtcgccaaacgcatcaaagccttggaagag
aagatgtacgcgttggcgcgggatcttgaattcgaagcggcggcgcagatgcgcgatgaa
attggcaagttgcgtgagcggttgatcaccgtctga
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integrated database retrieval system
