KEGG   Pseudomonas frederiksbergensis: PFAS1_25225
Entry
PFAS1_25225       CDS       T04786                                 
Name
(GenBank) alpha-ketoglutarate-dependent dioxygenase AlkB
  KO
K03919  DNA oxidative demethylase [EC:1.14.11.33]
Organism
pfk  Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:pfk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pfk03400]
    PFAS1_25225
Enzymes [BR:pfk01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.33  DNA oxidative demethylase
     PFAS1_25225
DNA repair and recombination proteins [BR:pfk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   Direct repair
    PFAS1_25225
SSDB
Motif
Pfam: 2OG-FeII_Oxy_2 2OG-FeII_Oxy
Other DBs
NCBI-ProteinID: APV42448
LinkDB
Position
complement(5357915..5358580)
AA seq 221 aa
MNPTTFDLFADAEPEQQPRLDRIGDQSCVLRGFALPWLDQLLPALDAVLAAAPFRQMITP
GGFTMSVALSSCGLLGWTTDRSGYRYTREDPLTGQPWPKMPEVFLELAQAAAREAGFADF
LPDSCLINRYVPGAKMSLHQDKNEVSYAAPIVSVSLGLPAMFLFGGFERSDKSQRVPLLH
GDIVVWGGVDRLRYHGVLPIKDGQHPRLGEQRINFTFRTAG
NT seq 666 nt   +upstreamnt  +downstreamnt
atgaacccgaccaccttcgacttgtttgccgacgcggaacccgagcagcaacccaggctc
gatcgtatcggcgaccagtcctgcgtcctcagaggctttgccctgccctggctggatcag
ttgctgcccgcgctggacgcggttctggcggccgcaccgtttcggcagatgatcacgccc
gggggctttaccatgtcggtcgccttgagcagttgcggattgctgggctggaccaccgac
cgcagcggttatcgctatacccgcgaggatccgctgaccgggcaaccctggccgaaaatg
cccgaggtgtttcttgaactggcacaagcggcggcgcgggaagcggggtttgcggatttc
ctgccggattcctgcctgatcaaccgctatgttcccggagccaagatgtcgttgcatcag
gacaaaaacgaagtttcctacgcagcgcccattgtttcagtgtcccttggactgccggcg
atgttcctgttcggcggcttcgagcgcagcgataaaagccaacgcgtgccgctgttgcat
ggcgacatcgtggtctggggtggcgtggatcgtttgcgttatcacggggtcctgccgatc
aaggatggccaacacccgcgactgggcgaacagcggatcaacttcacctttcgcaccgcc
ggatga

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