Pseudomonas frederiksbergensis: PFAS1_25485
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Entry
PFAS1_25485 CDS
T04786
Name
(GenBank) chromosome segregation protein SMC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pfk
Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfk03400
]
PFAS1_25485
DNA repair and recombination proteins [BR:
pfk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PFAS1_25485
Archaeal homologous recombinant proteins
PFAS1_25485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
SMC_N
AAA_21
AAA_29
ABC_tran
nSTAND3
MMR_HSR1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APV42496
UniProt:
A0A1P8F205
LinkDB
All DBs
Position
complement(5416717..5420358)
Genome browser
AA seq
1213 aa
AA seq
DB search
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR
LSNAQVSAKAPDADGEISTGDPRTLLRRGTGEGYAEVDFVGIDGRRYRARWEANRAREKA
GGKLQASRQSLRDIDLDQLLASQKVEFKTQLESVLGLNFEQFTRAVLLAQSEFSAFLKAN
DNERSELLEKLTDTALYTRLGRRAFDKTKEARDTHKLLQDQATGVTPLSPEARAELDERF
NEAQQQLKTQQAQLKQLELQHTWLRDLRQLQDEQQSATEQLQSARQHWEGLAGERLKLTR
LEQLAPQRHQFARKTELTAQLTPLAAQIQQHTQQQAELNERQTQLEHSLSTAQTALVEAQ
SQHTSSAPLLRQAFEEQSTLARLVKDASRSADLKQQAELACTQGQNTIQGLLDQQKQVAE
RLQRIAGELEQSTPLAPLSDAWNAYRDRLQQLMLIGNRLNKGQAELAALEQSAARAAEDL
STQRQNLEVLYKEAGAEPEAVAEQIQILGSLLQDNRKQQRAFEELTRLWASQQELDKRAS
ELQQRQMIAQQERERLTQEGVKAKSELLVAEQTLIVTRELLERQRLARSASVEELREQLQ
DNQPCPVCGSPDHPYHQPEALLQSLGRHDESEQANAQKAVDLLKEQLTDLRAEVGGVIAQ
QKELLQQQEHLATQQQSLAPSLEAHPLAAQLLTQDALKRDAWLTQQSSQLNQSITQDEQR
QTALLTLQQDAARLQQQLRSAEAASQQAAQHLANQQRELSSDRQRLDEELTAFSTLLPAD
TLQALRNEPAATFMQLDQQISQRLEQLDQQRDELGEQQQRQQTLEKVQDRQLTRLQQLET
AHQQFTALADQQQACQQKLTQLLGEHNSAEQWQQQLDQAVEQARNAEATANQELQAVRTR
LVQLGAELKAQQERAQALEAEDRELSGKIADWRALHPELDDGGLEALLSVDDQQVSELRQ
QLQQSEKAIEQTKVLLQERDQRLLNHQAQHNSNLDAEQLATALVELQNLFTASEHRCAEL
RAEQAEDQRRQNANQALAQQIADAYTEYQRWARLNALIGSATGDTFRKIAQAYNLDLLVH
HANVQLRQLVRRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV
RRQGNGLSTLEVK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctcgcgatccgcctgaaaaacctcgcctcactggccgggccgtttgaaatc
gactttaccgctgagccgttggccagcgccggtctgttcgcgatcaccgggccgaccggc
gccggtaaaagcaccttgctcgacgctttgtgcctggcgctgttcggtgctgtacctcgg
ctcagcaatgcccaggtgtctgccaaagccccagacgccgacggcgagatcagcaccggc
gacccgcgcacgttgctgcgtcgtggcacaggtgaagggtatgccgaagtcgatttcgtt
ggcatcgatggccgtcgctaccgcgctcgctgggaagcaaatcgcgcccgcgagaaggct
ggcggcaagttgcaagccagccgccagagcttgcgcgacatcgatctggatcaactgctg
gccagtcagaaagttgaattcaaaacccagctcgaatctgtactgggcctgaactttgag
caattcacccgtgcggtgctgttggctcaaagcgaattcagtgcgttcctcaaggctaac
gacaacgaacgtagcgaactgctggaaaaactcaccgacaccgcgctgtatacgcgcctc
ggtcgccgggcgttcgacaaaaccaaagaggctcgcgacacccacaaactgttgcaggac
caggccaccggtgtgacgccgttgtcgccggaggcacgtgcggaactcgatgaacgcttc
aacgaggctcagcaacaactcaagacccagcaagcgcaactcaagcaattggagctgcaa
cacacctggctcagggatttacgtcagttgcaggacgaacaacagagcgccaccgagcag
ctgcaatcggctcggcagcactgggaaggtttggccggcgaacgtttgaagctgactcgc
ctggagcaactggccccgcaacggcaccagttcgcccgcaagaccgaactcaccgcccag
ctcacaccgctggccgcgcaaattcagcaacacactcaacagcaagccgagctgaacgag
cgccagacgcaactcgaacacagcctcagcactgcgcagaccgcactcgtcgaggcccaa
agccaacacacctcaagcgctccgctgctgcgtcaggccttcgaagagcaaagcaccctc
gcccgcctggtcaaggatgccagccgcagtgccgacctcaagcagcaggcggaactggcc
tgcactcagggccaaaacacgatccaaggcttgctcgaccaacagaaacaggtcgccgag
cgtttgcagcggattgccggggagcttgagcaaagcacccctctggcgcccttgagcgat
gcctggaacgcataccgtgatcgcctgcaacagctgatgctgatcggcaatcgcctgaac
aagggccaggccgagctggccgccctggaacaaagcgccgctcgcgctgccgaggacctg
tccactcagcgccagaaccttgaagtgctgtacaaggaggccggcgccgaaccggaagcg
gtggccgagcagatccagattctcgggagtctgttgcaagataaccgcaagcagcagcgg
gcctttgaagagctgacgcgcctgtgggccagtcagcaggaactggacaagcgcgcgtcc
gagctccagcagcgtcagatgatcgctcagcaagaacgagaacgtctgacccaggagggt
gtgaaagccaagagcgaattgctcgtcgccgaacagaccctgatcgtcacccgcgaactg
ctggaacgccagcgcctggctcgcagcgccagcgtcgaagaactgcgcgagcaactgcag
gacaatcagccgtgcccggtctgcggcagccccgaccatccttatcatcagcccgaagcc
ctgctgcagagccttggccggcatgatgaaagcgaacaggccaacgcccagaaagccgtc
gacctgctgaaagaacagctcactgacctgcgtgctgaagtgggcggcgtgattgcccag
caaaaggagttgctgcaacaacaagaacacctcgcgacccagcaacagagcctggcgccg
agccttgaagcacatccgttagctgcgcagctgctcacgcaggatgcgctcaaacgcgat
gcctggctgacgcaacaaagcagtcagctaaaccagagcatcactcaggacgaacaacgg
caaaccgccctgctcaccctgcagcaagacgccgcgcgccttcaacagcaactgcgtagc
gctgaagcggcgagccagcaagcagcccaacacctggccaaccagcaacgtgagttgagc
agcgatcgccagcgtctggacgaggaattgacggcgttcagcaccctgctcccggccgat
acgctgcaagcgctgcgcaacgaaccggccgcgaccttcatgcagttggaccagcagatc
agccagcgcctggagcaactcgatcagcaacgcgatgaactgggcgaacagcaacaacgg
cagcagacgctggagaaagtacaggaccgccaactcactcgcctccaacagttggaaacc
gcccaccagcagttcaccgccctcgccgaccagcaacaggcctgccaacaaaaactcacg
caattgctcggcgaacacaacagcgccgagcagtggcagcagcaactggatcaagccgtc
gaacaggcgcgcaatgccgaggcgaccgccaatcaggaactgcaagccgtgcgtacgcgc
ctggtgcagctgggggccgaactcaaggcccagcaggaacgcgcgcaggcactggaagct
gaagatcgcgagctgagcggcaagatcgccgactggcgcgctttgcatccggaactggat
gacggtggcctggaagctctgctgagtgtcgacgaccagcaggtcagcgaactgcgccag
caattgcagcaaagcgaaaaagccatcgaacagaccaaagtcctgttgcaggaacgcgat
cagcgcctgctcaatcaccaggcgcagcacaacagcaatctcgacgccgaacaactggcg
acagcgcttgtcgagctgcaaaatctgttcaccgccagcgaacaccgttgcgccgaactg
cgtgccgaacaggccgaggaccagcgccggcaaaacgccaatcaggccctcgcgcagcag
atcgccgacgcctacaccgaataccagcgctgggcacgtttgaatgcactgatcggttcg
gccacgggcgacaccttccgcaagatcgcccaggcctacaacctcgacctgctggtgcat
cacgccaacgttcagttgcggcaactggtgcggcgctatcgcctcaaacgtggtggcagc
atgctcgggttgctggtaatggacaccgagatgggtgatgaactgcgttcggtgcattcg
ttgtccggcggcgagacgttcctggtgtcgctggccctggccttgggcctggcatcaatg
gcatcgagcacgctgaaaatcgaatcgttgttcatcgacgaaggcttcggcagcctcgat
ccggaatccctgcaactggccatggatgcgctcgacggcttgcaagcgcagggacgaaaa
gtcgcggtgatttcacacgttcaggaaatgcatgaacggattccggtgcagattcaggtc
cgccgtcagggcaacggcctgagtacgctggaggtgaaatga
DBGET
integrated database retrieval system
