Pseudomonas frederiksbergensis: PFAS1_27480
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Entry
PFAS1_27480 CDS
T04786
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pfk
Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfk03016
]
PFAS1_27480
Enzymes [BR:
pfk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PFAS1_27480
Transfer RNA biogenesis [BR:
pfk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PFAS1_27480
Prokaryotic type
tRNA splicing ligases
PFAS1_27480
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
APV42869
LinkDB
All DBs
Position
complement(5900214..5901440)
Genome browser
AA seq
408 aa
AA seq
DB search
MQAHTYQLLEVANGKPIKLWTEGVPVEHEARQQLMNTARMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAACTSLTASDLPDNLHGLRCAIEKAVPHGRTIGRG
VRDKGAWDSVPHQADRAWAALEPRFKAITDKYPKLANTNNRGHLGTLGSGNHFVEVCLDE
TDRVWFMLHSGSRGVGNAIGNLFIQMAQADMRQHLANLPDRDLAYFKEGSRHFDDYVEAV
GWAQDFARQNRALMMQAVIQATRKVVNKPFEAALEAVNCHHNYVQKERHFGQDILVTRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEDSFCSCSHGAGRTMSRTQAKSLFTVEDQIRA
TAHVECRKDAAVIDEIPMAYKDIDHVMHAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcccatacctatcaactgctggaagtcgccaacggcaaaccgatcaagctctgg
accgaaggcgtcccggtagaacacgaagccaggcagcaattgatgaataccgccaggatg
ccgttcatcttcaagcacctggcggtgatgcccgacgtacacctgggcaagggctcgacc
atcggcagcgtcattcccacggtcggcgcgatcattccagccgctgtcggagtggatatc
ggctgcgggatgatcgccgcgtgcacgtcgctgaccgccagtgatttacccgacaacctg
catggcttgcgttgcgcgatcgagaaagcggtgccccatggccgcaccattgggcgcggc
gttcgggacaagggcgcctgggacagcgttccgcatcaggcggaccgggcctgggcggca
ctggagccccggttcaaggcgatcactgacaagtacccgaaacttgccaacaccaacaac
cgtgggcacttgggcacgctgggcagcggaaatcacttcgtcgaggtgtgcctggatgaa
accgaccgggtctggttcatgctgcacagtggttcccgtggcgttggcaacgctatcggc
aacctgttcattcaaatggcgcaggcggacatgcgtcagcacctcgccaatctgccggac
cgtgacctggcttactttaaagagggcagccggcatttcgatgactacgtcgaagcggtc
ggttgggcccaggacttcgccaggcagaaccgtgcattgatgatgcaagcggtgattcag
gcgacccgaaaagtggtcaacaagccttttgaggcggcgctggaagcggtgaactgccac
cacaactacgtgcagaaagagcggcattttggtcaggatattctggtcacccgcaaaggc
gcggtgtcggccaagaagggcgagttggggattattccgggatcgatgggggcgaaaagc
ttcatcgtccgtgggctgggtaacgaggattctttctgctcctgcagccacggcgccggc
cgcaccatgagtcgtacccaggcgaaaagcctgtttaccgtcgaagaccagatccgtgcc
accgcccacgtggagtgccgcaaggatgctgccgtcatcgatgaaattccgatggcctac
aaggacatcgaccacgtcatgcacgcccagcgcgagctggtggaagtgctgcacaccttg
cgtcaggtggtgtgcgtaaaaggatag
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