Pseudomonas frederiksbergensis: PFAS1_28020
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Entry
PFAS1_28020 CDS
T04786
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pfk
Pseudomonas frederiksbergensis
Pathway
pfk02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PFAS1_28020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfk03021
]
PFAS1_28020
Transcription machinery [BR:
pfk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PFAS1_28020
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
GerE
Sigma70_ECF
HTH_23
HTH_11
HTH_24
HTH_40
HTH_20
HTH_36
Motif
Other DBs
NCBI-ProteinID:
APV42967
LinkDB
All DBs
Position
complement(6014657..6015178)
Genome browser
AA seq
173 aa
AA seq
DB search
MTVNDLSLRSAVNDLYCDHHGWLKGWLRKRLGNAFDAADLAQDTFVRVIKARNALEIREP
RPYLSMIAKGLLIDLFRRRSLEQSYLEALAAMPEWQQPSLEEQAILLQALMEIDRLLQGL
GPKVKQTFILSQFDGLTYPQIAERLSVSVRTVNNHMAKAMEHCCLMQIRLQLA
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtcaacgatttgtccctgcgcagcgctgtcaatgatctgtattgcgaccatcac
ggttggctcaaaggctggctgcgcaaacggctgggcaatgccttcgatgcggcggacctg
gcgcaggacaccttcgtccgggtcatcaaggcgcgcaacgcgctggagattcgcgagccg
cgaccttacctgtcaatgatcgccaagggcttgctgatcgatctgttccgtcggcgctcg
ctggagcagtcctatctggaagccttggccgccatgcccgaatggcaacagccctcgttg
gaggaacaggcgatcctgctgcaggccctgatggaaatcgaccgtttgctgcaagggctg
gggccgaaggtcaagcaaacgttcatcctgtctcagttcgatggcctgacctatccgcaa
attgccgagcgcctgagtgtcagcgtgcgcacggtcaacaatcacatggccaaggccatg
gaacattgctgcctgatgcagatccggttgcagctcgcatga
DBGET
integrated database retrieval system
