Pseudomonas frederiksbergensis: PFAS1_28405
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Entry
PFAS1_28405 CDS
T04786
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pfk
Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfk03016
]
PFAS1_28405
Enzymes [BR:
pfk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
PFAS1_28405
Transfer RNA biogenesis [BR:
pfk03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
PFAS1_28405
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Acb1
Motif
Other DBs
NCBI-ProteinID:
APV43039
LinkDB
All DBs
Position
complement(6090742..6091281)
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AA seq
179 aa
AA seq
DB search
MSDESHEPLKRLFFALNCTPEQRRAIAQWRSALGLRDGRPVPVENFHLTLMFLGAVEVAK
IADICTAAASIRTPGVPLRVALDRLDVWRRAGVLVLAPEQASPELLRLVYALEQAMLPFG
FEDSPKEFRPHLTLMRDYRVPVPESATPPEFYLRADHFTLFESHKGRYRALAEWPLVAS
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaatcccatgagccgttaaaacgcctgttttttgccttgaactgcacgccc
gagcaacgtcgagccattgcccaatggcgcagcgcactcgggctcagggatggccggccg
gtgccggtggaaaactttcatctgacgttgatgttcttgggggctgtcgaggtggcaaaa
atcgccgatatctgcacagccgcagccagtattcgaacgccgggcgtgcctttgagggtg
gcgctcgatcggctggatgtctggcgcagagcaggggtgttggtgctcgcgccggagcag
gcatccccggagctgctgcggttggtgtatgcgcttgagcaggccatgctgccgttcggg
tttgaggactcgccgaaggagttccggccgcatctgacattgatgcgtgattaccgagtg
ccggtgccagagtccgcgacaccgcccgagttctatctacgggccgatcacttcactctg
ttcgaatcccataagggccgctaccgagcgctggccgagtggccgctcgttgcctcataa
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