Pseudomonas protegens Pf-5: PFL_0082
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Entry
PFL_0082 CDS
T00249
Symbol
polA
Name
(GenBank) DNA-directed DNA polymerase
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl03030
DNA replication
pfl03410
Base excision repair
pfl03420
Nucleotide excision repair
pfl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFL_0082 (polA)
03410 Base excision repair
PFL_0082 (polA)
03420 Nucleotide excision repair
PFL_0082 (polA)
03440 Homologous recombination
PFL_0082 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfl03032
]
PFL_0082 (polA)
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_0082 (polA)
Enzymes [BR:
pfl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PFL_0082 (polA)
DNA replication proteins [BR:
pfl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PFL_0082 (polA)
DNA repair and recombination proteins [BR:
pfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PFL_0082 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFL_0082 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AAY95499
UniProt:
Q4KKJ9
LinkDB
All DBs
Position
78780..81569
Genome browser
AA seq
929 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGGTFRDDMYAEYKANRPSMPDDMRVQIEPLHASVIALGFPLLCVEGVEADDVIGTLAR
SSAAADRPVVISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEEHKEM
AFLSYQLATIKVDVPLDVGLDDLHLGEPDREKLVELYSLLEFKSWLDELQRDAKRVELSG
AEATPAAVPPQAVEQAPLELQYETILDQERFDAWLEKLKGAKLIAFDTETTGIDAQQAQL
VGLSFSVKAGEAAYVPLTHSYMGAPAQLDRDSVLLALKPLLEDPKLLKVGQHAKFDMNIL
ANCAIGGDQANGITVRGVAFDTMLESYVLNSTATRHDMDSLAQKYLDHSTVSFQDIAGKG
AKQLTFDQIPLEQAGPYAAEDADVTLRLHQVLFDKLSAIPSLASVLTDIEMPLVPVLARI
ERQGALVDDKLLGVQSIELGDKMVALEREAFEIAGEEFNLGSPKQLGSILYDKLGLPVLK
KTAKGQPSTAEEVLAKLAEDDYPLPRVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY
HQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFIAPPGYKLLAADYSQIELRIMAHLSR
DEGLLNAFRNNLDVHTATAAEVFKVELKDVTSDQRRSAKAINFGLIYGMGAQKLGKDIGV
DTKQAKAYIDTYFARYPGVREYMDRTRAQAADQGYVETIFGRRLYLPEINSNKPQERAGA
ERTAINAPMQGTAADIIKKAMVAVDNWLASSGLDARVILQVHDELVLEVREDLVDQVREE
IRGHMSGAATLDVPLLVEVGVGNNWDEAH
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcccccctcgtcctggtggacggttcttcatatctgtaccgcgcgttccac
gcgctgccaccgctgaccacctccaaaggcctgcctaccggcgcggtcaagggcgtgttg
aacatgctcaagagcctgcgcaaacagtacccggacagcccgttcgccgtggtcttcgat
gccaagggcgggaccttccgcgatgacatgtatgccgaatacaaggccaaccgtccgagc
atgcccgacgacatgcgggtgcagatcgagccgttgcacgccagcgtgatcgccctgggt
ttccccctgttgtgcgtggaaggggtcgaggccgatgacgtgatcggcaccctggcccgc
agcagcgcggcggcggaccgcccggtggtgatttccactggcgacaaggacatggcacag
ctggtggacgggcacattaccctggtcaacaccatgtccggtagcagcatggatgtggaa
ggcgtgaaggagaaattcggcgtcgctcccgagcagatcatcgattacctggcgctgatg
ggcgactcttccgacaacattcccggggtgccgggcattggtccgaagaccgcttccggc
ctgctggtcggggtcaatggcgggttgaaggagctgtacgaacagctcgatatcgtaccg
accctgccgatccgcggggccaagaccttgccggccaagctcgaagaacacaaggaaatg
gccttcctctcctatcagttggcgaccatcaaggtcgacgtgccgctggatgtcgggctc
gacgacctgcacctgggcgagccggaccgcgagaagctggtggagctctacagcctgctg
gagttcaagagctggctcgacgagttgcagcgcgatgccaagcgtgtcgagctcagcggc
gctgaggcgacacccgccgccgtgccgccgcaggctgtggagcaagctccgctggagctg
cagtacgaaaccatcctcgaccaggagcgtttcgatgcctggctggagaaactcaagggc
gccaagctgattgccttcgataccgaaaccaccgggatcgatgcgcagcaggcgcaactg
gtgggcctgtccttctcggtcaaggccggcgaagcggcctatgttcccctgacccactcc
tacatgggcgcgccggcacagctggatcgcgacagcgtactgctggccctcaagcccttg
ctggaagatcccaagctgctcaaggtcggccagcacgccaagttcgacatgaacatcctg
gccaactgcgccatcggcggcgaccaggccaatggcatcactgtgcgcggcgtggccttc
gataccatgctcgaatcctacgtgctcaactccaccgccacccgccatgacatggacagc
ctggcgcagaagtacctggaccacagcactgtgagtttccaggacatcgctggcaagggt
gccaagcagttgaccttcgaccagattccccttgagcaggccggcccctacgccgcggaa
gatgccgacgtgaccctgcgcctgcaccaggtcctgttcgacaagctgtccgcgataccg
agcctggccagcgtgctcaccgatatcgaaatgcctttggtgccggtcctggcgcgcatc
gagcgccagggagcactggtggacgacaagctcctgggagtgcagagcatcgaactgggg
gacaagatggtcgccctggagcgcgaagccttcgagatcgccggcgaggagttcaacctg
ggctcgcccaagcagctgggcagcatcctctacgacaagctcggcctgccggtgctgaaa
aagactgccaagggccagccatccacggctgaagaggtgctggccaagctggcggaagac
gactatccgctgccgcgggtgctgatgcagtaccgttccatgagcaagctgaaaagcacc
tataccgaccgcctgccggagcagatcaacccgcgtaccgggcgcatccatacctcctat
catcaggcggtagcgtccaccggccggctgtcctccagcgatccgaacctgcagaacatt
ccggtacgtaccgctgaaggccggcgcattcgccaggccttcatcgcgccgccgggctac
aagctgttggcagcggactattcgcagatcgagttgcggatcatggcgcacctgtcccgc
gatgaaggtttgctcaacgccttccgcaacaacctggacgtgcacaccgccacggcggcc
gaggtgttcaaggtcgagctcaaggacgtcacttccgatcagcgccgcagcgccaaggcc
atcaacttcggcctgatctacggtatgggcgcgcagaagctgggcaaggacatcggtgtc
gataccaagcaggccaaggcctatatcgacacctacttcgcgcgttacccgggggttcgc
gagtacatggaccgcacccgcgcccaggccgcggaccagggttatgtcgagaccatcttc
ggtcgccgcctgtacctgccggagatcaactccaacaagccacaggagcgcgccggcgcc
gaacgcaccgcgatcaatgcgccgatgcagggcaccgcggcagacatcatcaagaaagcc
atggtggccgtggacaactggctggcgtcctcggggctggatgcccgagtgattctccag
gtgcacgacgaactggtgctggaagtgcgcgaggacctggtggaccaggttcgtgaggaa
attcgcgggcacatgagcggtgccgcgaccctggatgtgccgctattggtggaagtgggg
gtgggaaataactgggatgaggcccattaa
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