Pseudomonas protegens Pf-5: PFL_0577
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Entry
PFL_0577 CDS
T00249
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFL_0577 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfl03019
]
PFL_0577 (rnr)
03016 Transfer RNA biogenesis [BR:
pfl03016
]
PFL_0577 (rnr)
Enzymes [BR:
pfl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PFL_0577 (rnr)
Messenger RNA biogenesis [BR:
pfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PFL_0577 (rnr)
Transfer RNA biogenesis [BR:
pfl03016
]
Prokaryotic type
tRNA degradation factors
PFL_0577 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TRAM
OB_Dis3
TRAM_2
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
AAY95984
UniProt:
Q4KJ64
LinkDB
All DBs
Position
671352..673979
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AA seq
875 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILQHLADRGSPASREQLVEEFGLTTEDQLEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANAKIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAGKLKPEVEEKDKEKRIDLRDLPFVTIDGEDARDFDDAVFCEAKPGKLRLFG
GGWKLYVAIADVSSYVKIGSALDAEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR
LAMVCEMTISKSGEMTDYQFYEAVIHSKARLTYNKVSTMLEQPKTSEAKQLRGEYGDVLP
HLKQLYALYKVLLGARHTRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLE
TIKDRPDYHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQDTPHVRRAGAMTIPKARIYPYDEATLEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTINAPIGRKKRGAADAPASKVVEEPAPAKA
GRRSSAKEKAVEAYRPSDAAAKNAEVRKSREMKRALLAEAKGGGKATSAGKSGKPAPSRA
GEKPAKPSKHRKGPPKAGSASGAKSGGARKPKAKS
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatacgaaaac
cctattcctagccgcgaactcatccttcagcaccttgctgaccggggttcgcctgctagt
cgcgagcagttggtagaagagttcggtctgaccacggaagaccagctggaagccctgcgc
cgccgcctgcgcgccatggagcgcgacgctcaactgatctatacccgccgcggcacctat
gcgccggtggacaagctcgacctgattctcggccgtatcagcggtcaccgcgacggcttc
ggcttcctggtgccggatgacggcagcgacgacctgttcatgagcccggcgcaaatgcgt
ctggtattcgatggcgaccgcgccctggcccgggtttccggcctggatcgtcgcggccgt
cgcgaaggcgtgatcgtcgaagtggtgtcccgtgcccacgaaagcatcgtcggtcgctac
ttcgaagaaggtggcatcggtttcgtggtggcagacaacccgaagatccagcaggaagtg
ctggtaacgccggggcgcaatgccaatgccaagatcggtcagttcgtcgaagtgaagatc
actcactggccgacgccgcgcttccagccgcaaggtgatgtggtggaagtggtgggcaac
tacatggcaccgggcatggaaatcgatgttgccctgcgcacctacgatattcctcatgtc
tggcctgaggcggtgctcaaggaggccggcaagctcaagcccgaagtggaagagaaggac
aaagagaagcgcatcgatctgcgtgatctgcctttcgtcaccatcgacggcgaagacgcc
cgcgacttcgacgacgccgttttctgcgaagccaagcccggcaagctgcgcctgttcggt
ggtggctggaagctgtatgtggcgattgccgacgtctccagttacgtgaagatcggttcg
gctctggatgccgaagcccaggtgcgcggcaactcggtgtacttccccgagcgggtgatc
ccgatgctgcccgagcaactgtccaacggcctgtgctcgctgaacccgaaagtcgatcgc
ctggccatggtttgcgagatgaccatctccaagtccggcgagatgaccgattaccagttc
tacgaagcggtgatccactccaaggcgcgtctgacctacaacaaggtcagcaccatgctc
gagcagccgaaaaccagcgaagccaagcagttgcgcggtgaatacggcgatgtcctgccg
cacctgaagcagctgtatgcgctgtacaaggtcttgctgggggctcgtcatacccggggc
gccatcgacttcgagacccaggaaacccggatcatcttcggttccgagcgcaagatcgcc
gaaattcgtccgactacacgcaatgatgcgcacaagctgatcgaggaatgcatgctggcg
gccaacgtggccaccgccgagttcctcaagaagcacgagattccggccctgtaccgggtg
cacgatggtccgccgccggaacgtctggaaaaactgcgcgccttcctcggcgaactgggc
ctgtccctgcataaaggcaaggatggcccgacgccgaaggactaccaggcattgctggaa
accatcaaggaccgtccggattaccacctgatccagaccgtgatgctgcgctccctgagc
caggcggtgtacagcgctgataaccagggccacttcggcctgaattacgaagcctatacc
cacttcacttcgccgatccgtcgctacccggacctgttgacccatcgggccatccgcagc
gtcatccactccaagcaggacacgccgcacgtgcgccgcgccggggcgatgaccattccg
aaggcgcgtatctatccgtacgacgaagcgaccctggagcagctcggcgagcagtgctcg
atgagcgagcgccgtgccgatgaggctacgcgggacgtagtgaactggctcaagtgcgag
ttcatgaaggatcgtgtgggcgagtccttcccgggtgtgatcaccgcggtgaccggtttc
ggcctgttcgtcgagttgaccgacatctacgtcgagggcctggtgcacgtcaccgccttg
ccgggggactactaccacttcgaccctgtgcatcaccgcctggcgggcgagcgcaccggt
cgcagcttccgcctgggcgatactgtggaagtgcgtgtcatgcgcgtcgacctggacgag
cgcaagatcgatttcgaaatggccgagaagaccataaacgcaccgatcggccgcaagaag
cgtggcgccgcggacgcacctgccagcaaggtcgtggaagagccggctccagccaaggcg
gggcgtcgcagctccgccaaggaaaaggcggtcgaggcttatcgtccaagcgacgctgcc
gcgaaaaacgccgaagtgcgcaaaagccgcgaaatgaagcgggcgctgctggccgaagcc
aagggcggtggtaaagcgacgtctgcgggaaagtccggtaagccggcgccctcgcgcgct
ggcgaaaagcccgccaagccgagcaaacatcgtaaaggtccgcccaaggcgggctccgct
tccggcgctaaaagcggcggggcgcgcaaacctaaggccaagtcatga
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