Pseudomonas protegens Pf-5: PFL_0740
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Entry
PFL_0740 CDS
T00249
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PFL_0740 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_0740 (recC)
Enzymes [BR:
pfl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PFL_0740 (recC)
DNA repair and recombination proteins [BR:
pfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PFL_0740 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AAY96142
UniProt:
Q4KIQ6
LinkDB
All DBs
Position
859419..862871
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AA seq
1150 aa
AA seq
DB search
MPDASSLNPGFMVVHGNRLDELRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPEVDDGGGCGIAAAIDVQLPGSFMWQLYRLVLGRDEIPPKSLLDKAPLTWRLMRLLPEL
IDEPHFEPLQRFLTHDSDLRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRNGRGE
TKALTPANCWQAELWRALLLDVGTEGMAQSRAGVHQRFIERINQLEVAPSGLPSRVIVFG
ISSLPAQALEALAGLARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQARKAGMPQAL
DPQTLHQHAHPLLAAWGKQGRDYINLLDSYDDPNSYRSAFRDGRIDLFSDSQPASMLQQL
QDDILELRPLNETRELWPQVDIQHDQSIRFHIAHSAQREVEILHDQLLARFSAEPDLRPR
DVIVMVPDIDSYAPHIRAVFGQLERDDRRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRARFGVDEADLPTLHRWIEGAGIRWGMNAEQRAELGLPPELEQNS
WRFGLRRMLLGYAVGRSDACDGIEPYDEIGGLDAALIGPLVALLDALQIAYQQLTQPADP
AEWGERLHNLLEQFFLASNEHDDYLLGQLDDLRENWLETCESVGLQDQLPLTVVREAWLA
GLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHLASGWRLPD
EQDSLLEALTQEHPLQPFSARYFHDSDTLFSYAREWQVLHQVREELGAVERLEPYVQDEP
LSLAQLQDFLRNPVRHFFSQRLKVFFEAMEAPLADEEPFVLDALQRYSLSDSLLEAALGD
AAQPEQALQAQAQRLQASGLLPMAGFGECLQRELLEPLPDLLQRYRQLLDLWPTPVTSAL
PVSLELQGVRLEGWLSSLHQRADGGLLAVSAIPNGIGSTKTRKWHRLIKPWVNHLLACAS
GYSLTTALVASDDSLLLPPLEQEVARQILGSLLQAWQAGMRLPLPVAIKTAFAWLGQSDP
DKAAAAARKTYDGDGQNSEGERRQSPALARQFADYNALIADETFSGWAETLYRPLLNAPW
RSALGEEAGA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgccggacgcctcgtccctcaaccctggtttcatggtggttcacggtaaccgcctggac
gagttgcgcagcctggtggtcagttggatgcggcgttatcccctggcgcccctggaaaat
gaaattgccctggtacagagcaacggtatcgcccaatggctgaaactggccctggccgaa
gaccccgaagtggatgacggcggtggctgcggtattgccgctgccattgatgtgcaattg
ccgggcagtttcatgtggcagttgtaccgcctggtcctggggcgagacgaaatcccgccc
aaatccctgctggataaagctcccctgacctggcggctgatgcgcctgttgccggagttg
atcgatgagccgcatttcgaacccctgcaacgcttcctgacccacgacagtgacctgcgc
aagcgctatcaattggccgagcgtctggccgatctgttcgaccaataccaggtatatcga
gccgactggctggaggattgggccgccggccgccaccaactgcgcaatggtcgtggtgaa
accaaggccctgacgcctgccaactgctggcaggccgagctatggcgcgcgctgctgttg
gatgtcggcaccgaggggatggcccagagtcgcgcaggcgttcaccagcgctttatcgaa
cggatcaaccaactggaggtggcgcccagtggcttgccgtcccgagtgatcgttttcggt
atctcttcgctgccggcccaggccctggaggcactggccgggttggcccgcttcagtcag
gtgctgctgtgtgtgcacaacccttgtcgccatcactgggccgatatcgttgccgacaag
gacctgctgcgccaccaatacaaacgccaggcgcgcaaggccggcatgcctcaggccctg
gatccgcaaaccctgcaccagcacgcccacccgctgctggccgcctggggcaagcaaggc
cgtgactacatcaacctgctggacagctatgacgatcccaacagctatcgcagcgctttt
cgcgatggccggatcgatctgttcagtgacagccagccggccagtatgctccagcaattg
caggacgacattctcgaactgcgcccgctgaacgaaacacgtgagttgtggccgcaggtc
gatatccagcacgatcaatcgattcgctttcacattgcccacagcgcccagcgagaagtg
gaaatccttcacgaccagctcctggcgcgcttcagtgcagagcccgacctgcggccccgg
gatgtgatcgtcatggtcccggacatcgacagctacgccccgcatatccgcgcggtgttc
ggccagctggagcgggatgaccggcgcttcattccctttaccctcactgaccagggccag
cgtggccgtgacccgctgctgatcgccgtcgaacatctattgaagctgccggacagtcgt
tttccggtcagtgagattctcgacctgctggacgttccagccctgcgtgcgcgttttggc
gtcgacgaagccgacctgccgaccctgcaccgctggattgaaggtgccggcatccgttgg
ggaatgaatgccgagcagcgcgcagaactggggctgcccccggaactggagcagaacagc
tggcgtttcggcttgcggcgcatgctcctgggttatgccgtcggccgctccgacgcctgt
gacggtatcgagccttatgacgagatcggtggcctggatgcggcgctgatcggtcccctg
gtcgcccttcttgacgccctgcagatcgcctaccagcaactcacccagccggcggatccg
gcggagtggggcgagcgcctgcacaacctgctggaacagttcttccttgccagcaacgag
cacgatgattacctgctgggacagctcgacgacctgcgggaaaactggctggaaacctgc
gagtctgtgggcctgcaagatcagttgccgctgacggtggtccgcgaagcctggctggct
ggcctggaccaggggcgcctgtcccagcgtttcctcgccggagcggtgaacttctgcacc
ctgatgccgatgcgcgccattcccttcaagctggtgtgcctgctgggcatgaacgatggc
gattaccccagggcgcagccgcctctggacttcgacctgatgggtagcgactaccgcccc
ggcgaccgatcacggcgcgaagacgaccgttacctactgcttgaagccctgctctcggct
cgtgaccaactttatgtcagttgggttggccgcagcattcgcgacaacagcgagcgcccg
gcctcggtcctgatcggccagttgcgcgatcacctggccagcggctggcgactgcccgat
gagcaggactccctgctggaggccctgacccaggagcatcccctgcaacccttcagtgcc
cgctatttccacgacagcgacacgctgttcagctacgcccgggagtggcaagtgctgcat
caggtccgagaggaactgggcgcagtcgaacgcctggaaccctatgtccaggacgagccc
ctgagccttgcccagttgcaggatttcctgcgcaacccggtgcggcatttcttcagccaa
aggctcaaggtgttctttgaagccatggaagcaccgctggccgatgaagagcccttcgtg
ctcgatgccctgcagcgctacagcctcagcgacagcctgctggaagcggcgctgggcgac
gcagcgcagcccgagcaagccttgcaggcccaggcccagaggctgcaagccagtggcctg
ttgcccatggccggttttggcgaatgcctgcagcgcgaactgctggagcccctgccggac
ctgttgcagcgttatcggcaactgctcgacctgtggccgaccccggtaaccagcgcgctg
ccggtgagcctggaactgcaaggcgtgcgcctggaaggttggctcagcagcctgcaccag
cgagctgatggcgggttgttggctgtgagcgccatccccaacggcatcggctcgaccaag
acccgtaaatggcatcggctgatcaagccttgggtcaatcatctgctggcctgcgccagt
ggttactccttgaccaccgcgctggtggccagcgatgacagcctgttgttgccgccgctg
gagcaggaggtggcccggcagattctcggcagcctgctgcaggcctggcaggccggcatg
cgcctgccgctgccggtggcgatcaagaccgccttcgcctggctgggccagagcgacccg
gacaaagccgcggccgctgcacgcaagacctacgatggcgacggccagaacagcgagggc
gaacgccggcaaagcccggccctggcccgccaattcgccgactacaacgcactgatcgcc
gatgaaaccttcagcggttgggccgagaccctttatcgacccctgttgaatgctccctgg
cgttcggcgctcggcgaggaggcaggcgcatga
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