Pseudomonas protegens Pf-5: PFL_1247
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Entry
PFL_1247 CDS
T00249
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pfl
Pseudomonas protegens Pf-5
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfl03009
]
PFL_1247 (rimO)
Enzymes [BR:
pfl01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
PFL_1247 (rimO)
Ribosome biogenesis [BR:
pfl03009
]
Prokaryotic type
ribosomal protein modification factors
PFL_1247 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
YajR_YAM
CLP1_P
Matrix_Paramyxo_N
Motif
Other DBs
NCBI-ProteinID:
AAY90534
UniProt:
Q4KHA5
LinkDB
All DBs
Position
complement(1416287..1417624)
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AA seq
445 aa
AA seq
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MSTPSAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDS
AKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRDVHPSVLAVTGPQQYEQVVNAVHEVVP
PKQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDE
AQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHY
VYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWREICPE
LIIRSTFIVGFPGETEEDFQYLLNWLTEAQLDRVGCFQYSPVEGAPANDLDLEVVPDEVK
QDRWERFMAHQQEISSARLQQRIGKEIEVLIDEVDENGAVGRCFFDAPEIDGNVFIDGAG
DLKPGDKVWCRVTDADEYDLWAETL
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccctccgcgccggccaatccgaaagtcggcttcgtatccctgggttgccca
aaagctctggtcgactccgagcgcatcctcactcaactgcgcatggaaggctatgacgtg
gtctccacctaccaggacgccgacgtcgtggtggtcaacacctgcggtttcatcgactcg
gccaaggccgaatccctggaagtgatcggcgaagccatcaaggaaaacggcaaggtcatc
gtcaccggctgcatgggcgtggaagaaggcaatatccgtgacgtgcaccctagcgtgctg
gcggtcaccggcccgcaacaatacgagcaggtggtcaacgccgtgcacgaagtggtgcca
ccgaaacaggaccacaaccctctgatcgacctggtgccgccgcaaggcatcaagctgacc
ccgcgacactacgcctacctgaagatttccgaaggctgcaaccacagctgcagcttctgc
atcatcccgtcgatgcgcggcaagctggtcagccgcccggtgggcgatgtgctcgacgag
gcgcagcgcctggtcaagtccggggtcaaggaactgctggtgatctcccaggacaccagc
gcctatggcgtcgacgtcaagtaccgcaccggcttctggaacggcgcaccggtgaagacc
cgcatgaccgagctctgcgaagccctgagcaccctgggcgtatgggttcgcctgcactac
gtgtacccctacccgcacgtggacgagctgattccgctgatggccgccggcaagatcctg
ccgtacctggacatcccgttccagcatgccagcccgaaagtgctcaaggccatgaagcgc
ccggccttcgaagacaagaccctggcgcgaatcaagaactggcgcgagatctgccctgaa
ctgatcatccgttcgacctttatcgtcggcttcccgggcgaaaccgaagaagacttccag
tacctgctgaactggctgaccgaagctcaactggaccgcgtcggctgcttccagtactcg
ccggtggaaggcgctccagccaacgacctggacctggaagtggtcccggacgaggtcaag
caggaccgttgggagcgcttcatggcgcaccagcaggaaatcagctcggcacgcctgcaa
cagcgcatcggcaaggaaatcgaagtgctgatcgatgaagtcgacgagaatggcgccgtg
ggccgctgcttcttcgatgccccggaaatcgacggcaatgtgttcatcgacggcgcgggc
gacctgaagccgggcgacaaggtctggtgccgggtgaccgacgccgacgaatacgacctc
tgggccgaaaccctgtaa
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