Pseudomonas protegens Pf-5: PFL_1802
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Entry
PFL_1802 CDS
T00249
Symbol
holB
Name
(GenBank) DNA polymerase III, delta' subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl03030
DNA replication
pfl03430
Mismatch repair
pfl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFL_1802 (holB)
03430 Mismatch repair
PFL_1802 (holB)
03440 Homologous recombination
PFL_1802 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfl03032
]
PFL_1802 (holB)
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_1802 (holB)
Enzymes [BR:
pfl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PFL_1802 (holB)
DNA replication proteins [BR:
pfl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PFL_1802 (holB)
DNA repair and recombination proteins [BR:
pfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PFL_1802 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA
AAA_16
nSTAND3
AAA_5
iSTAND
HolB_lid
Mg_chelatase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAY91091
UniProt:
Q4KFR1
LinkDB
All DBs
Position
2003938..2004924
Genome browser
AA seq
328 aa
AA seq
DB search
MAEVFPWQDSLWQQLAGRTQHAHAYLLHGPAGIGKRALAERLMARLLCQRPEGLDACGQC
KSCLLLLAGSHPDNYVLEPEEADKAIKVDQVRELVSFVVQTAQLGGRKVVLIEPVESMNI
NAANALLKSLEEPSGNTVLLLVSHQPSRLLPTIKSRCVQQACPLPSEAMSLEWLAQALPD
CSEEERVELLTLAAGSPLAAVSLQAQGVREQRAQVVEGVKKLLKQQQSPTQLAESWSAIP
LLLLFDWFCDWSNLVLRYQLTQDEQGLGLQDMRKVLQYLAQKSAQAKVLNIQDWILAQRQ
KVLSKANLNRVLLLEALLVQWAALPTQN
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaagtcttcccctggcaggacagcctctggcagcaattggcggggcgtacccag
catgcccatgcctacctgttgcatggcccggcgggtatcggcaagcgggccctggccgag
cggctgatggcgcgcttgctgtgccagcgtccggaaggcctggacgcctgtggccaatgc
aagtcctgcctgttgctgctggccggcagccacccggacaactacgtgctggagccggag
gaagcggacaaggcgatcaaggtagaccaggtccgcgaactggtgagcttcgtggtccag
accgcccagttgggggggcgcaaggtggtgctgatcgagccggtggagtcgatgaatatc
aacgccgccaacgccctgctcaagagtctcgaggagccttccggcaacactgtgctgttg
ctggtaagccaccagcccagccggttgttgcccacgatcaagagccgttgcgtgcagcag
gcctgcccgctgcccagcgaggccatgagccttgagtggctggcccaggccctgcctgat
tgctccgaggaggagcgggtggagctcttgaccctggctgccggttcgccgctggcagcg
gtcagcctgcaggcccagggtgttcgcgagcagcgggcgcaagtggtggaaggggtgaag
aagctgctgaaacagcagcagtcgcccacgcaactggccgaatcctggagtgccattccc
ttgttgctgctgttcgactggttctgcgactggtcgaacctggtcctgcgctatcaactg
acccaggatgagcagggactgggcctgcaggacatgcgcaaggtgctgcaatacctggcg
cagaagtccgcccaggccaaggtgctgaacatccaggactggatcctggcccagcgccag
aaggtcctgagcaaggccaacctcaaccgcgtgctgttgctggaagccttgctggtgcag
tgggcggccctgcctacccagaattga
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