Pseudomonas protegens Pf-5: PFL_2046
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Entry
PFL_2046 CDS
T00249
Symbol
uvrB
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
pfl
Pseudomonas protegens Pf-5
Pathway
pfl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PFL_2046 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_2046 (uvrB)
DNA repair and recombination proteins [BR:
pfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFL_2046 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PFL_2046 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_30
Cauli_AT
Motif
Other DBs
NCBI-ProteinID:
AAY91331
UniProt:
Q4KF19
LinkDB
All DBs
Position
2272690..2274705
Genome browser
AA seq
671 aa
AA seq
DB search
MSEFQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQVQRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY
TRNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESISAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLDAIEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRPAGAAPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEWEGVSPQTIFVSATPGNYEAEHAGRVVEQVVRPTGLVDPQ
VEVRPALTQVDDLLSEITKRVAVEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVVKDVADIMEGATV
PGSRSKKRKGMAKAAEENARYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQMRDE
ITKLRERLLTV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaattccagctagtcacccgcttccagcccgccggcgaccagccggaagccatt
cgcctgatggtcgaaggcatcgaggccgggctggcccaccagaccctgctcggtgtgacc
ggttcgggcaagaccttcagcatcgccaacgtgatcgcccaggtgcagcgcccgaccctg
gtgctggcgccgaacaagaccctggcggcgcagctgtatggtgagttcaaggccttcttc
ccgaacaacgcggtggagtacttcgtttcctactacgactactaccagcccgaagcctat
gtgccgtcctccgacacctttatcgagaaggacgcctcgatcaacgaccatatcgagcag
atgcgcctgtccgcgaccaaggcgctgctggagcgcaaggacgccatcatcgtcaccacg
gtgtcgtgcatctatggcctgggcagcccggaaacctacctgaagatggtcctgcacgtg
gatcgcggggacaaactcgatcagcgcgccctgctgcgccgcctggcggacttgcagtac
acccgcaacgacatggatttcgcccgcgccaccttccgcgtgcgtggcgatgtgatcgac
atctatccggcggagtcggacctggaagcgatccgcatcgagctgttcgatgacgaagtg
gaaagcatcagcgccttcgaccccttgaccggtgaagtgatccgcaaactgccgcgcttc
accttctaccccaagagccactacgtgaccccgcgggaaaccctgctggacgccatcgaa
gggatcaaggtggagttgcaggagcgcctggaatacctgcgctccaacaacaagctggtg
gaagcccagcgcctggagcagcgcacccgtttcgacctggagatgatcctcgaactgggc
tactgcaacggcatcgagaactactcgcgctacctctcggggcgtccggctggcgcggcg
ccacctaccttgtacgactacctgccggcggatgccttgctggtgatcgacgaatcccac
gtcagcgtgccccaggtcggcgccatgtataagggcgaccgctcgcgcaaggagaccctg
gttgagtacggcttccgcctgccatcggctctggataaccggccaatgcgttttgacgag
tgggaaggggtgagcccgcagaccatcttcgtttcggccactccgggcaactatgaggcc
gagcacgccggccgcgtggtggagcaggtggtgcgtcccaccgggctggtggacccgcaa
gtggaagtgcgcccggccctgacccaggtggacgacctgctgtcggaaatcaccaagcgt
gtggccgtggaagagcgggtactggtgaccaccctgaccaagcgcatggccgaagacctt
accgattacctggccgaccatggcgtgcgtgtgcgctacctgcactcggacatcgacacc
gtggagcgggtggagatcatccgcgacctgcgcctgggcactttcgatgtgctggtgggg
atcaacctgctgcgtgagggtctggacatgccggaagtgtccctggtggcgattctcgat
gccgacaaggaaggcttcctgcgttccgagcgttcgctgatccagaccatcggccgggcc
gcgcgtaacctcaatggccgggcgattctctatgccgaccgcatcaccggctccatggag
cgggcgattggcgagaccgaacgccgtcgcgacaagcagatcgccttcaacctggccaat
ggcatcacccccaagggtgtggtcaaggacgttgccgacatcatggaaggcgccaccgtg
cccggttcgcgcagcaagaagcgcaagggcatggccaaggccgcggaggaaaacgcccgc
tacgaaaacgaactgcgctcgcccagcgagatcaccaagcgcattcgccagctcgaagag
aagatgtaccaactggcccgcgacctggagttcgaagccgcggcgcagatgcgcgacgaa
atcaccaagctgcgcgagcgcttgctcaccgtctaa
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