Pseudomonas protegens Pf-5: PFL_2304 Help Entry PFL_2304          CDS       T00249                                  Name (GenBank) RtcB family protein   KO K14415   tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8] Organism pfl  Pseudomonas protegens Pf-5 Brite KEGG Orthology (KO) [BR:pfl00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03016 Transfer RNA biogenesis [BR:pfl03016]     PFL_2304 Enzymes [BR:pfl01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase      PFL_2304 Transfer RNA biogenesis [BR:pfl03016]  Eukaryotic type   tRNA spricing factors    tRNA splicing ligase complex     PFL_2304  Prokaryotic type    tRNA splicing ligases     PFL_2304 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RtcB Motif Other DBs NCBI-ProteinID:  AAY91577 UniProt:  Q4KEC2 LinkDB All DBs Position 2568638..2569864 Genome browser AA seq 408 aa AA seqDB search MEHKTYQLLEVANGKPIKMWTQGVPVENEARQQLMNTAKMPFIFKHLAVMPDVHLGKGST IGSVIPTVGAIIPAAVGVDIGCGMIAARTSLTASDLPDNLAGLRSAIEAAVPHGRTSPRS GRDKGAWGDVPNQADQAWAALHPRFKAITDKYPALANSNNRKHLGTLGGGNHFIEVCLDE ANRVWFMLHSGSRGVGNAIGNLFIHLAQADMRQHIANLPDRDLAYFEEGSQHFNDYVEAV AWAQDFARQNRELMMQLVIQATRKVISKPFEVALEAVNCHHNYVQKERHFGEEVLVTRKG AVSAKKGELGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRTMSRTKAKNTFTLADQIRA TAHVECRKDEAVIDEIPMAYKDIDQVMHAQRELVEVLHTLRQVVCVKG NT seq 1227 nt NT seq  +upstreamnt  +downstreamnt atggaacacaagacctaccaactgctggaagtcgccaacggcaagccgatcaagatgtgg acccagggcgtgccggtggaaaacgaagcccgccagcaattgatgaacaccgcgaagatg ccgttcatcttcaagcacctggcggtgatgcccgacgtgcacctgggtaagggttcgacc atcggtagcgtgatccccacggtgggcgcgatcatcccggctgcggtcggggtggatatc ggctgcggaatgatcgccgcccgtacttcgctgaccgcctccgacctgccggataacctg gccggattgcgtagcgccatcgaggcggcggtgcctcacggtcgtacctcgccccgtagc ggtcgcgataagggcgcctggggcgacgtgccgaatcaggccgaccaggcctgggctgcg ctgcacccacgtttcaaggcgatcaccgataagtacccggccctggccaacagcaacaac cgcaagcacctgggaaccctcggcgggggtaaccacttcatcgaggtctgcctggatgag gccaaccgggtctggttcatgctccacagcggttcccgtggcgtaggtaacgccatcggc aacctgttcattcacctggcccaggccgatatgcgccagcacatcgccaacctgccggac cgcgacctggcctatttcgaggaaggcagccagcacttcaacgattacgtggaagcggtg gcctgggcccaggatttcgcccggcagaaccgtgagctgatgatgcaactggtgatccag gccacccgcaaggtgatcagcaagcccttcgaggtggcgctggaggcagtcaactgccac cacaactacgtgcagaaggagcgccacttcggtgaagaggtgctggtgacccgcaagggg gcggtgtcggcgaagaagggcgagctggggatcattccgggttcgatgggggccaagagc ttcattgtccgcggattgggtaacgaggaggcgttctgctcctgcagccacggcgcgggg cgtaccatgagccgcaccaaggccaagaacaccttcaccctggccgaccagatccgcgcg accgcccatgtggagtgccgtaaggacgaagcggtgatcgatgaaatcccgatggcctac aaggacatcgaccaagtgatgcacgcccagcgcgagctggtggaagtgctgcacaccctg cgtcaggtggtgtgcgttaaggggtag

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