Pseudomonas protegens Pf-5: PFL_2729
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Entry
PFL_2729 CDS
T00249
Symbol
sbcC
Name
(GenBank) exonuclease SbcCD, C subunit
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pfl
Pseudomonas protegens Pf-5
Brite
KEGG Orthology (KO) [BR:
pfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfl03400
]
PFL_2729 (sbcC)
DNA repair and recombination proteins [BR:
pfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PFL_2729 (sbcC)
Archaeal homologous recombinant proteins
PFL_2729 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_21
AAA_29
SMC_N
ABC_tran
RsgA_GTPase
cobW
DUF948
AAA_22
MMR_HSR1
nSTAND3
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AAY92002
UniProt:
Q4KD47
LinkDB
All DBs
Position
complement(3011647..3015291)
Genome browser
AA seq
1214 aa
AA seq
DB search
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR
LNNIGRETKVPEVDSEILTSDPRTLLRRGTGSGYAEVDFVGIDGRRYRARWETNRARDKA
TGKLQGSRQNLTDLDSEQLLSNQSKSEYKQLIEARLGLNFEQFTRAVMLAQSEFSAFLKA
DDKERSELLEKLTNTAVYSQLGRRAYSKSKEAEDAHKELKAQASGISPLEPEARAELEQQ
LSQAQQQLKEQQAQLRQLEAQHVWLKELRQWQEARQSAAEQLQAAEQDAQALAPERLRLQ
RLEQLAPQRHQFLRQAELGASLLPLRQQIQQQVEQQGALQQQQERLQQQLQDAGTPLSQA
QEQHSTSAPLLREAFAEQANLERLGQSLAQAEAQRSRAEQASTEGQQGIQQLLEKQRLVG
ERLERIAGQLAHSVALAPLSDAWNAYRERLQQLMLIGNRLHQGQAELPALEQRASSAAQQ
LSEQRTQLELLYSEAGAEPQAVAEQIQLLGTLLQDNRKQQRAVEELARLWAQQRELDQRG
QALQDRQQAVAAQREELNKVGLQAKAELVVAEQTLSVTQALLERQRLARSASVEELRAQL
QSDQPCPVCGSVEHPYHQPEALLQSLGRHDENEEASARKTVDSLKEQLNELRAQVQGLIA
QQKEFLQQQEQLASQMQALAPSLQAHPLSASLLDQDPPKRDAWLQQQLDQLQQSITQDEN
RQGALLTLQKDAARLQNQLQAAIDASQQAAQHLDKQQQQLSADRQRLDEELASFSHLLPA
EVLDGLRRDPASTFMQLDQQVLQRIEQLREQQEEAEEQQQRQLTLEKEQDRQLTRQQQLA
EAQQQFDTLHQQQQACQHRLAELLGQQPSAEHWQQHLEQTVDQARSAQALAQQQQQALHQ
QAIELGAELKAREERLQALESEQQQLAASIEQWRAGHPELDDAGLQQLLELDEEQVQQLR
QRLQDNDKAIEQAKVLLQERQQRLEQHQAQHNGNLETEQLAQALEQLQQQAQASEQQVAD
LRARQSEDQRRQAANQALNQRLEQAYAQWQRWARLSALIGSAEGDKFRKIAQAYNLDLLV
HHANAQLRQLVRRYRLKRGGSMLGLLVLDTEMGDELRSVHSLSGGETFLVSLALALGLAS
MASSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIK
VSRQGNGLSTLEVK
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctggccatccgcctgaagaacctggcctccctggccggccccttcgagatc
gacttcaccgccgagcccctggccagcgccgggctgttcgccattaccgggcccaccggc
gccggcaagagcaccctgctggatgccctgtgcctggcgctgttcggcgcggtgccgcgg
ctgaacaatatcggccgcgagaccaaggtccccgaggtcgacagcgagatcctcaccagc
gacccgcgcaccctgctgcgccgcggcaccggcagcggctatgccgaggtggattttgtc
ggcatcgacggccgtcgctaccgcgcccgctgggaaaccaaccgcgcccgcgacaaagcc
accggcaagctgcaaggcagccggcagaacctcaccgaccttgacagcgaacagctgctg
agcaaccagagcaagagcgaatacaagcaactgatcgaggcccgcctggggctcaacttc
gaacagttcacccgggcggtgatgctggcccagagcgagttcagcgcctttctcaaggcc
gacgacaaggaacgcagcgagctgctggaaaagctcaccaacactgcggtctacagccag
ttggggcgccgcgcctacagcaagagcaaggaggccgaagacgcccacaaggagctcaag
gcccaggccagcggcatcagcccgctggagcccgaggcccgggccgagcttgaacagcag
ttgagccaggcccagcaacagctcaaggagcaacaggcccagctcaggcagttggaagcc
cagcacgtctggctcaaggaactgcgccaatggcaggaagcccggcagagcgccgccgaa
caactgcaagcagccgaacaggacgcccaggccctggccccggagcgcctgcgcctgcaa
cgcctggagcaactggcgccgcagcggcaccagttcctgcgccaggcagagctgggcgcc
agcctgctgccgttgcgccagcagatccagcagcaggtcgaacagcaaggcgccctgcaa
caacagcaggaacgcctgcaacagcaactgcaggacgccggcacgcccctgtcccaggcc
caggaacagcacagcaccagcgccccgttgctgcgcgaagcctttgccgaacaggccaac
ctggagcgcctggggcagagcctggcccaggccgaggcccaacgcagccgcgccgagcag
gccagcaccgagggccagcaaggcatccagcaactgctggaaaaacagcgcctggtgggc
gaacgcctggagcggatcgccgggcaactggcccacagcgtcgccctcgcccccttgagc
gacgcctggaacgcctaccgcgaacgcctgcaacagctgatgctgatcggcaatcgcctg
caccagggccaggccgaactgccggccctggaacagcgcgccagcagcgccgcccagcaa
ctgagcgagcaacgcacgcagctcgaactgctctacagcgaagccggggccgagccccag
gcggtggccgagcagatccagttgctcggcaccctgctccaggacaaccgcaagcagcag
cgcgccgtcgaagagctggcccggctctgggcccagcaacgcgaactggaccagcgcggc
caggccctgcaggacaggcagcaggcggtggccgcccagcgcgaggagctgaacaaggtc
ggcctgcaggccaaggccgagctggtggtggccgagcagaccctgagcgtcacccaggcc
ctgctggagcgccagcggctggcccgcagcgccagcgtcgaggaattgcgcgcccaattg
cagagcgaccagccgtgcccggtgtgcggcagcgtcgagcacccctaccaccagcctgaa
gccttgctgcagagcctcgggcgccacgacgagaacgaggaagccagcgcccgcaagacg
gtggacagcctcaaggaacagctcaacgaactgcgggcccaggtccaggggctgatcgcc
cagcagaaggaattcctccagcagcaggaacagctggcgagccagatgcaggccctggcc
ccaagcctgcaagcccaccccttgagcgccagcctcctggaccaggacccgcccaagcgc
gacgcctggctgcaacagcaactcgaccagctgcagcagagcatcacccaggacgaaaac
cgccagggcgccctgctgaccctgcaaaaagatgccgcgcgcctgcaaaaccagctgcag
gcggcaatcgacgccagccagcaggccgcccagcacctggacaagcaacaacagcaactg
agcgccgaccgccagcgcctggacgaggaactggccagcttcagccacttgctgccggcg
gaggtcctcgacggcctgcgccgcgacccggccagcactttcatgcagctcgaccagcag
gtgctgcaacgcatcgagcaactgcgcgagcagcaggaagaggccgaagaacagcaacag
cgccagctgaccctggaaaaggaacaggaccgccagttgacccgccagcaacaactggcc
gaggcccaacagcagttcgacaccctgcaccagcagcaacaggcctgccagcacaggctc
gccgaactgctgggccagcagcccagcgccgagcactggcagcagcatctggagcaaacc
gtggaccaggctcgcagcgcccaggccctggcccagcaacagcagcaggcgctgcaccag
caagcgatcgagttgggtgccgagctcaaggcccgggaagaacgcctgcaagccctggaa
agcgaacaacagcagctggccgccagcatcgagcagtggcgcgccgggcacccggaactg
gatgacgccggcctgcaacagctgctggagctggacgaagaacaggtgcagcaactgcgc
cagcgcctgcaagacaacgacaaggccatcgagcaggccaaggtcctgctgcaggaacgc
cagcagcgcctggaacagcatcaggcccagcacaacggcaacctggagaccgaacaactg
gcccaggccctggaacagctgcagcaacaggcccaggccagcgaacaacaggtggcggac
ctgcgtgcacggcaaagcgaggaccagcgccgccaggccgccaaccaggccctcaaccaa
cgccttgaacaggcctacgcccagtggcagcgctgggcccggctcagcgccctgatcggc
tcggccgaaggcgacaagttccgcaagatcgcccaggcctacaacctcgacctgctggtg
caccacgccaatgcccaactgcgccaactggtgcgccgctaccgcctcaagcgcggtggc
agcatgctcggcctgctggtgctggacaccgaaatgggcgacgaactgcgctcggtgcac
tcgctgtccggcggcgaaaccttcctggtgtccctggccctggccctggggctggcctcc
atggcttccagcaccctgaagatcgaatcgctgttcatcgacgaaggcttcggcagcctc
gaccccgagtccctgcaactggccatggatgccctcgacggcctgcaggcccagggccgc
aaggtggcggtgatctcccacgtacaggaaatgcacgaacggattccggtacagatcaag
gtcagccgccagggcaatggcctgagcaccctggaggtgaaatga
DBGET
integrated database retrieval system
